Array 1 2338209-2337940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUX010000001.1 Klebsiella oxytoca strain CPO121 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2338208 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 2338148 28 100.0 32 ............................ TGAATCCATACATGGGCCCGCTGCGGCTATTG 2338088 28 100.0 32 ............................ AGAGAGGTGCTTCCGCATGTTCCTGATGCGTG 2338028 28 100.0 33 ............................ TGTGTATCACCGAACGCAACAGCCTGATCACAA 2337967 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCACTATCTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGGTTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2348650-2346638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUX010000001.1 Klebsiella oxytoca strain CPO121 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2348649 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 2348589 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 2348529 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 2348468 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 2348408 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 2348347 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 2348287 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 2348227 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 2348167 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 2348107 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 2348047 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 2347987 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 2347927 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 2347867 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 2347807 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 2347747 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 2347687 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 2347627 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 2347567 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 2347507 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 2347447 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 2347387 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 2347326 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 2347266 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 2347206 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 2347146 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 2347086 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 2347026 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 2346966 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 2346905 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 2346845 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 2346785 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 2346725 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 2346665 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2362359-2361909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUX010000001.1 Klebsiella oxytoca strain CPO121 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2362358 28 100.0 32 ............................ CTGTAGTTATCCGCATACGACTCAAACGATCC 2362298 28 100.0 33 ............................ ATCGAACGCCTGGACAACAGCAACGATGCCAAC 2362237 28 100.0 33 ............................ GGTAATCAGCGACCGGCACCACATCAACGCCGA 2362176 28 96.4 32 ...............A............ AGAATCCGCTGACCCAGCTCATCAGGTAACGC 2362116 28 100.0 32 ............................ GCGAACTGACCCATGCCGTGATGCGTGATCTG 2362056 28 100.0 32 ............................ TCCACAGAATACGCCTGTGTAAATCCGATCAT 2361996 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 2361936 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTTGGGGCAGGGCGCTATTCCATTGGCGGAAACTCGGCCTGGCGCTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCAGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //