Array 1 1116397-1119037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012072.1 Schaalia meyeri strain W712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1116397 37 100.0 34 ..................................... ACGGCTCGCGGCCCCGCCGCTCCGTGCGCTCCGA 1116468 37 100.0 37 ..................................... ATACCCGGATGTCGTTCACCAGTGAAAGTTTTCCCAA 1116542 37 100.0 37 ..................................... TGACCCGGAGGCGATCAAGAAGCGGTACGACGCCGGC 1116616 37 100.0 36 ..................................... GTCGCAGCATTTTTGTAGAAGCAACCGTTTTACATC 1116689 37 100.0 37 ..................................... GCGCTGCCCGCGTGCGTGTGGCGACCGCGTCGATGCC 1116763 37 100.0 38 ..................................... CTCGCGGGCTGTCAGCGTCGCGTGAGGTGGAGGGGGAG 1116838 37 100.0 38 ..................................... GAGACCAAGAACGACTGAAGCCTCCTTCCAACGATATC 1116913 37 100.0 39 ..................................... CCACGTTGAAGCGCGTGGTCCCGTCGAAACTGACCATGC 1116989 37 97.3 40 ....................................A GCGCGTCGAACGTGAGCGCCGCAAGTACGCGGACTACGAC 1117066 37 100.0 37 ..................................... CCACAAGACGACGTCGTCCGAGGACCAGCGCAATCCC 1117140 37 100.0 39 ..................................... TTCAAGAAGAAGGCTGAGGAATCCTCCTCAGCTGGCCTG 1117216 37 100.0 37 ..................................... CCCCCACCCGATCCGAGACAGGGCCGCGAGAATCGAG 1117290 37 100.0 38 ..................................... GCACGTAGGCGAAATCCCCGCCAGGCAGAACAGACTGA 1117365 37 100.0 38 ..................................... GCGGGCATCACCTGGTACATCAACACCGTGTGGACCAT 1117440 37 100.0 36 ..................................... AGACATCGGCAAGTCTCTCGCCACTGCGGCCGGAGG 1117513 37 100.0 35 ..................................... CAGGATCCATTGACGAGCCAGTGAACTCATCGACT 1117585 37 100.0 36 ..................................... ACCTCACGAATAAGGTTAAATACTGCGTGCCCGTCC 1117658 37 100.0 37 ..................................... TCGCGGTCGGCGGCGCGATCGCCGCCGGCGCGATCGG 1117732 37 100.0 38 ..................................... TTTTTTCGCTGTGTTTTGGGGGAAAGAACCACGCTAGG 1117807 37 100.0 39 ..................................... GCTCTATGATCTTGGGGATGGCTGCGCCGAAGGCTTCGC 1117883 37 97.3 38 ......................G.............. CTTCAGGGCGACGGTGCGTGCGGTCAGCATTTGGGTCG 1117958 37 100.0 38 ..................................... CGGTGTTGGCACGGGCGGGGTGGGGTGTCCCCGGTGGG 1118033 37 97.3 38 ...........................A......... CAGCTTTCTCAGGCCACGTTGAGACAATCTTCAGATCT 1118108 37 100.0 36 ..................................... GAGGCGATGCTGCTGTCCGCTGCACATACGTACGGG 1118181 37 97.3 36 .G................................... CCGACATGTCGATACGGCGAGCTGGAATACCAACGC 1118254 37 100.0 41 ..................................... CCGACAACCATGGAGTGGATGCCGAATGCTTCGGCCCCCAG 1118332 37 97.3 39 ..........................T.......... GACACCGATCTGGTCGGTGAGGATCACCTGTCCGTCCTG 1118408 37 97.3 36 ..........................T.......... CTGTGAGTGTCAGTAACTTGCCATACGTCCCCGCGT 1118481 37 97.3 36 ..........................T.......... CCAGAGACGGGCGCGGTCAGCGGCTTTACGGGTGCG 1118554 37 97.3 36 ..........................T.......... CTGTGAGTGTCAGTAACTTGCCATACGTCCCCGCGT 1118627 37 97.3 38 ..........................T.......... CCATGGACGGAGGCGGTCAGAGCATCGAAGTGTTTGGC 1118702 37 97.3 38 ..........................T.......... GTGGTTGAAAATAAATCTGATATCCCGGCGCAATATGT 1118777 37 97.3 37 ..........................T.......... GAGGTCGGCTTTGGGCCAGCCGATTGTGGTGGCGGTT 1118851 37 97.3 38 ..........................T.......... TATGAACAGTGCTCATTCAGTGACTACACCGATACAGT 1118926 37 100.0 39 ..................................... CGGTTGTTGGTTCGACTCCAACCGCAGGAGCTCTCCCCC 1119002 36 89.2 0 ..............................-..C.GA | ========== ====== ====== ====== ===================================== ========================================= ================== 36 37 98.8 37 GTCAGAAAGCACCTAGCGCCATAAGGCGCATTAAGAC # Left flank : GGATTCCGCCACGGATTCGACGAGGACGGCTCGGGTGATCGCGTCCAATTGGATGATCGCGGTCGGGTCCACGCGCATGATCGTTGGTGGGGTCCAGTCCGGGGCGGCCAGTTCGAGGAGCTGATCGTCGGTGAGCGGCGCGTGGCCGGTATGGTTACCCCTTGTGAGGAGTTCCCGGCGGGCGCGCGTGAGCGCCTCAGGGGTGCGTGCGTCCTTCATGAACGAGGCCGTGGCAGGGTGCGTCATCGTCGTGCCTTCCGAGATAAGACCTTTACAGTTACCTTAAAACCCGACAAGGTGGGTACGTCGCAACACGCCGACGCACGGGCAATTTCCGGCGCGGCCACCCCTCTTTGAGCCGGGGGGTGGCGAAGCCGGGAATTGCAACGAAAACTCTGCTAATCTGGCTTCGTGCTTGATGGTCGATACGGTGCTTTTTCGGCCACTGGCGATCCGGCGGGACATTTCCCCAGGCCAGACGGGACGCGACACGCCGGGCT # Right flank : AATACCTGGCAAAGGAGACTTCGAGCACGTGAGCTCAGCCCGGCGGTGACACCGGCCAGGTCGCAGGGCACCCGTGGATAGGAAATGGCTTCGCGGATAGGTTATGCGTTCATGGATAGGTTATGCACTCGTGGATAGGAACCTAAGCTATCCAGATGGCCGTAACCTATCCACGTAGCAACAACCTATCCAGGAAGTAGCCTCGCGCAAACACGCACGATCCGCCAGGGGCCGCGCAACAAACCCACAAGTATGCGCACGACAAACCGACAAGTACGCGCGGCACACCAGGCTCACGCCTGCGACTCCCCCAAAACAAAGCGGGCCTCCTCGGGGAAAGCCCCGGGGAGGCCCGCCACCCTCACTCGCCGCCCACCAGCACGCGCTTGGAGGGGTGGCGTCGGTCCTCGCCCCTCCACCACGGCATCCACGCGGCGTAACCATCCGCGGGGGGCGTCGGCACATCCGGCTGGAAGCCGAGATCGGCGGGGGTCTCGGGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTAGCGCCATAAGGCGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 1978115-1981992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012072.1 Schaalia meyeri strain W712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1978115 36 100.0 28 .................................... CCAGCCGTGATCGGGCGCGCCCTGATCG 1978179 36 100.0 28 .................................... GTCATGAACTGGTCGACGAACCGGGCGA 1978243 36 100.0 28 .................................... CAGAAGGTCGGCGGCTCGTTTGACAACG 1978307 36 100.0 28 .................................... CCGTTGTTGCGCTCCTCGTCGCGTATGG 1978371 36 100.0 28 .................................... TCGAACGAGCGAAGCGCGCCGCGCTCGT 1978435 36 100.0 28 .................................... TTCCTGACCGCCGCGATCACCCGCTCCC 1978499 36 100.0 28 .................................... TCGAACGTCGTCATCTTGCCATGCTTAG 1978563 36 100.0 28 .................................... CAACGGGGCGTCCGTCGCTGCCCGTGAG 1978627 36 100.0 28 .................................... GACGGGGACCGCTCCGTCAGTTTCGGGG 1978691 36 100.0 28 .................................... AAGGAAAGACCGCATGACAGACAATGAC 1978755 36 100.0 28 .................................... GCCTGGAAGTTGAAGGGAAAGGCCATTG 1978819 36 100.0 28 .................................... GTGGCGGTGTCGTGGATACGGTAAGGGA 1978883 36 100.0 28 .................................... GCTCATCGGCGCGGCCCGTAGACGGTGG 1978947 36 100.0 28 .................................... CTCACCACGACGGTCCCGCCCGCCGTGT 1979011 36 100.0 28 .................................... GTCGATTGGGTACTCTCGTTTCGCAAAG 1979075 36 100.0 28 .................................... GGCGTGTGGGGCGTCGAACTCCACGCCC 1979139 36 100.0 28 .................................... GACGGCGCGACAATGGTTCGCCGGTGGG 1979203 36 100.0 28 .................................... TCGGTCTTCGGGCGGGCGTTTCCCCCCG 1979267 36 100.0 28 .................................... ATCCCGGCGGGCGTCGCGCGTTGTGACG 1979331 36 100.0 28 .................................... ACGTCCGGTACATGGACCCGTGTCGGTG 1979395 36 100.0 28 .................................... CGTGGGATCGACGCGCCGCTCGACTTCC 1979459 36 100.0 28 .................................... GCCATGCGTGCAGGTCGTGGCGAGGTAG 1979523 36 100.0 28 .................................... TGCCTTGATCTGTGCCCACGCGGCGTCT 1979587 36 100.0 28 .................................... GAGTAGGTCGAGGATGGCGTGTGCATCC 1979651 36 100.0 28 .................................... GATTAGATCAGTCGTTGAAGTACTTCGC 1979715 36 100.0 29 .................................... GCTCGGGCCAATGGCCCGGCCTATCCGCG 1979780 36 100.0 28 .................................... CCATTGTCGCGCTCCTCGTCGCTTATGG 1979844 36 100.0 28 .................................... CGTCGGCTCGACGCTGTCGAGCGCGTGG 1979908 36 100.0 28 .................................... CATGTGAAAATGGGGAGTGGGTCTGGCC 1979972 36 100.0 28 .................................... GTTCCTTTCAGTGGGTCAGTTTCCGAAC 1980036 36 100.0 28 .................................... CTCGTGCAGTTCTGGCCGACGCTGAGCG 1980100 36 100.0 28 .................................... CACCGACACGACAAAGACGGCTCGCATG 1980164 36 100.0 29 .................................... GCCGCTGTCGCGCTCCTCGTCGCTTATGG 1980229 36 100.0 28 .................................... AACCTCGGCAACGGGCGCTACCGATACG 1980293 36 100.0 28 .................................... CGTGGTTTGCGCGGCTGGTTTTGGGCCA 1980357 36 100.0 28 .................................... AATGGTGGCAAGTACCGACCCTGGCAGC 1980421 36 100.0 28 .................................... TAACCTGCGCGCAACGCCCGGGCAGATG 1980485 36 100.0 28 .................................... ACTCCAGTCGGCTGGAAAGCAAATCAGC 1980549 36 100.0 28 .................................... AGGACGCCGCCGCCAACACGGCGCGTGT 1980613 36 100.0 28 .................................... GATTCGAGGCCACGTATGAATCCCTCGA 1980677 36 100.0 28 .................................... GCCCGCGGCATCGGGTTCCGGTCGGACG 1980741 36 100.0 28 .................................... ACGCGCCCGGGCGGCCCGCGCGAGCAGC 1980805 36 100.0 28 .................................... CAGGTAGTTCGCGATCTCACGGCGGCGA 1980869 36 100.0 28 .................................... GCTCGGGTCGTGTGGCTGCTGGTCGTAT 1980933 36 100.0 28 .................................... CACACGAAGAGTGGCCGCTGTACGCTTG 1980997 36 100.0 28 .................................... GGACTCCCTGAAGACCGGCAACGTCCGC 1981061 36 100.0 28 .................................... GGACCCGCTGTCCAGACCGCGCAGGACC 1981125 36 100.0 28 .................................... ATACCAGATCCTCGCCGCCGTGAAAATC 1981189 36 100.0 28 .................................... GGGCCTGCGCTCGGGGGCCTCGCTCATG 1981253 36 100.0 28 .................................... AATGCACGTATTCCCATCTGATGATGGC 1981317 36 100.0 28 .................................... GTACTCAAAAACATTGGTTGGTGGGCTA 1981381 36 100.0 28 .................................... CTTGACGATTCCACTCCCATGCTCGACG 1981445 36 100.0 28 .................................... TTCCCGCGGCGCGGGTGCAGCCGGGGGC 1981509 36 100.0 28 .................................... TTGGCTTCCCGAGGGCGTGACTTTGCAT 1981573 36 100.0 28 .................................... TGTCCATCCGGTTGGAGAGAATCTGCCA 1981637 36 100.0 28 .................................... GTCGGGGGTGCGTCCGTCGCGGTCGATC 1981701 36 100.0 28 .................................... ACACAGAACGAGAGATAGGAAAGACGAT 1981765 36 100.0 28 .................................... TCTACCCTTGGCGACCTGACGTCCATGC 1981829 36 100.0 28 .................................... GTCTCCCATGCCCATGGCGCGCTCACCG 1981893 36 100.0 28 .................................... CTGTACCGGCCGGCCTCCACCGAGGCGC 1981957 36 88.9 0 ............................A...TC.T | ========== ====== ====== ====== ==================================== ============================= ================== 61 36 99.8 28 CAGTATATCAAAGGGGATTGGTGATTGATTCCCAGC # Left flank : GAAGGACATGGGATTCCTGCTGTGGCTGAGTCTCTGGCGCAGTCGTTTGGACGGTACGTGGAGGGGGACGTGGATCGTCTGCGTGTGGTGTCGTGGCAGGGGCCCTCGGCGGTAGGTGTGGGTGAGTGAGATGGCGGATGACGCAATGTGGTGCTTGGTGATGTTCGATCTTCCGGTGGAGACGAAGCGGCAGCGACGCGAGGCAACTAGGTTCCGTCATGATTTGCTGGATTGGGGTTTTTGTATGGTCCAGTTCAGTGTGTACGTGAAGTATTGGCCGACCGGTGGGCAGGACCATGCGACGCTGCGTGCGATCAAGACTCACCTACCGGAGGGGGGCCAGGTGCGAGTATTGGCTTTAACGGACCGGCAGTGGGCCACGGGGCTTCGTTTTGAGAACGCGAAGCCCCGGAAGGAAGCTGGAAGCCCCGAGCAGCTCATGATTTTCTGACTGAGATCCCCTGGTTTTCCGCAGGATCCTGCGGAAAACCAGGGGATCT # Right flank : TTTAGCTCCGACAACGGGGTGATCAGGCGCAGTATGTCAATGGGCTGGGGTTATTCCAAACATTTGAGCTTAGATGTGCTGACAGGCAGCGATTGGCGAATCATTGGTCCAAACCCGAACAGATAGTTGTCAAGGCCTCTTACCGTCAAACGTGCTCGCAAAAGGGGCTTCTGTGAGGAATTGACGTAGTTTGGCTTCTCCGATCGTGGTCGTCCGGGAGAATATGTGTTCGCGGTGTCAGTTTCGAGGCTGCAATGCGTGTTCCTGTGTGGCTAAGCCACTTGGTTCGCTCGTGGCAAGGAAACGATAGGAGAAATGATAGTAGATGGGGCTAGGGTGACGATCCGCGCGCACGTCACCAGCGTCGGAAGCGAGTATCGCAAAGAGGTGATCTCTGGGATGTGTGATCTCTGTATCTGCGAATGGACCAGGAAGGTTCGTGACATTGGCTTCCGTTTTACGGATGTCGACGACGATCAGGTGTGGGACGTCACCATCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTATATCAAAGGGGATTGGTGATTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //