Array 1 145114-144344 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 145113 30 100.0 36 .............................. TTTGACCCCGAGAAGGTTAGGGCAAAAGTTATCTTT 145047 30 100.0 38 .............................. AGCTTCATTCCGGACGGGCCCAGCTCGGCCGGGCGCCA 144979 30 100.0 38 .............................. AGTTTCGTGTTGTTCAGCCAGACCTCCACCCTTACGCT 144911 30 100.0 37 .............................. ACGAGACTGCGGCGACGGCTATTATTGCGGCGAGCAC 144844 30 100.0 36 .............................. ACTTCTATAATCGACACGTCAACATTTCCCATCTCA 144778 30 100.0 34 .............................. TGGCAAAACATCCAGCTCCTGCTGCAGTCCCCAA 144714 30 100.0 37 .............................. CCTAAGAAGTTGTTCTTCAGGGTATTAACAAAGTTTG 144647 30 100.0 39 .............................. ACGGTAGCCTGCCTTGAACGCCCTGTCGTCGTTCACCAT 144578 30 100.0 38 .............................. TTCTCAACGAATGCTTTAACGTCGATCGGAGGTTTGAA 144510 30 100.0 40 .............................. AAATGACGGCTTGGGGTAAGTATCGCTGCCCCTACTGCTT 144440 30 100.0 37 .............................. TTGATATCTCGATAATTTAGCATACCTCGCATTAAAC 144373 30 96.7 0 .........T.................... | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 99.7 37 GTTCCAATAAGACTAGAAGAGAATTGAAAG # Left flank : CACCGCACCATTCTTCTTCTAAGAATTTTAGAAACACCTCCTTGGGTAGCTATTTTTCTTAGTTTCCCTGATCCTTTCTCGAATTTGCTAATTCTCTGCTCTTTAGTCTTTGGAGGGTTTTAGTAACATACTGTGAAAATATCACTAAATGTTTAAATTTTGGTTATACTATGTAACGAATTTTCTTCAAATTTGTCTGTTAAATTATCAGAAATCTTAGTTATATATTGACGCACGATATATCCTGAGCTTTTGGCATGATGGAACATGAGAGAAGAGTGGCATTCGAGAGAAGGCTTCAGGGCATTTTGGAGTCTGCAAGGGTGTTTAACTTTTAGATATTTTGAGGTTGCACCTCCTTTTATACATTGAATACGAGGTTTATAGCCCGAGTTAAGATCCGCGTTATTGGCAGGTATAATGTGGCCCGTCATCGAAAGGCTTATAATATCGGAGCTTTTTTAGAGGATATTGGGAGAATTGCACGAAAAATCGCGCCT # Right flank : AAAGGGGTATTAAATCCTGCCGTACTTCTTCATTATCTCCACTAGTTTATCCTTTGGGAGCTCGTACCTCACGTGATTATCTCGTCCATCCATAGTCCTTGCGCTCAGTAGTGAGTTTATTATTGCCTCTTCCACGGCTTCCGCCGTTGCCTTAAACAATGGTGAGAGAACTGAGTCGGGCAACGCTTTAATTTCCATAATATCCTTCTCGTAGTGCTTAACCCTGTTTGCAGTTGAGAATGCAACCGCTATGTCTCCGCTTCCGTTGTAGGCGTAGCCTCCAGTTCTAGCTAACCCCACCGTTGCCCTCTTGGCCAGCCTGTTTAGCTGTCTTGAGGTTAAGGGTGCATCGGTGGCAATGACCATTATTATGCTTCCCTTACCCTCTCCTCCTTTACCTGGCCAGTCTTTCAGCTCAATACCCACGGGCACTCCCGCTATCGTTAAATCCTCCCTCCTTCCAAAGTTGCTGAGAACTAATGCTCCGACCGTGTACTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 166943-168300 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================== ================== 166943 28 100.0 38 ............................ CATCGCCTTCTTGGCACCCTCCTTGATCCATCCTGGGA 167009 28 100.0 39 ............................ CTCAATAAGCCAGCCTATGGCTCCTCCAACGAGTTTTCC 167076 28 100.0 39 ............................ CATGGCCTTGACAACGATATCCCCCAATGCGGGGAAAGC 167143 28 100.0 39 ............................ CACTACAAACTTGCTCAATCCATGACTCCTTGCAAATTC 167210 28 100.0 44 ............................ CGAAAATCCACTCTTTCGACAGTTCGTCCTTTTCAACAACTCCA 167282 28 100.0 59 ............................ CAAAATTTCTTGAATGACTTTTATCGAGTGCTCTGCCCCCTCTATCCCTGCAATCTCAG 167369 28 96.4 37 ..............A............. GCTAAGTCGTCCGTATGAATTGTACCTGCCGCACTTG 167434 28 96.4 39 ..............A............. GGGGCCTGTTTACCGGGGCTAAGAAATACGGCTGGCTGG 167501 28 96.4 38 ..............A............. GATCTCAAGAACCCTAAGCCTGCTACCCTAGCAGTTGT 167567 28 100.0 46 ............................ GTTTTTCTGGGTGGGTTCTAACGTAGGTGGTTACTTGGGGTAGTAT 167641 28 100.0 48 ............................ GTGGATCCTCCTAAAGCGCCATTCGGCCATCCTGCTGGCCCTTCTGAA 167717 28 100.0 49 ............................ GAAGGCTTTCTGGAGTGATGGCCCGCTGTTCTGCCTGTCCTTTGTTTGT 167794 28 100.0 38 ............................ GACACTAACTTCCTGCTCCTCAAATCCCAATTTTATAA 167860 28 100.0 49 ............................ GGTCAAGTTGCGGACGATCTTGGCGTGGGCCCTGTCGAGGGCCTCGAAG 167937 28 100.0 38 ............................ GAGGGATTCTTGATCCATCAAATGTGTCACCAAAATCA 168003 28 96.4 38 ..............G............. GATTATCTTCTGTACCAACTGCTCTGCGTTTTCAACAC 168069 28 96.4 40 ..............G............. GCCGATGCTCTTTATTCCGCTCTCCTTGATTCCCCCTATG 168137 28 96.4 47 ..............G............. GTCCATATTTGATCTTGGCGATCCTACTCCTGATATTCGGAGCCATA 168212 28 96.4 34 ..............G............. GAAATGATGCATTTTCCTAATTAGCTTTTGATAA 168274 27 71.4 0 T.........T...T.G.....-..CTG | ========== ====== ====== ====== ============================ =========================================================== ================== 20 28 97.3 42 GTTTCCGTAGAACTCAATAGTGTGGAAA # Left flank : GTTTTTCATTTGTTGGTTTTGGGTTTGTTGGCGTTGTTTTATCCTATTGAAGGCCTGCTCGGGTCTGGAATTCTGGATTAAGGGTTTAGGTTGGGAACTACTGGGTTTAATGTCGTATTATAAATTTTTGCTCTGAGAGTATCTCGTTAGTGGTAATTTATTGGATGTTTTAGCTAACTAGGTGGTTATAACTTCTCCTGGCCCTATTCTTGATTTAAAGTCATAGAAACCTTAAATTGGATAGTCTAGGAGTTTTAGTTAACTTGCATTTTTGGATTAATTTAACGCCTCGAACTTTTTCGAGTTTACTTAGTTTCGATTGTTTGGAAGTTGATTTTACGGGTTTGTAAGGGTGGGTTAGTGAATTATTGTCATTTTCTGGCCCCGTTATTTTCAGGGTAAGTTTATAAAGGAATGACAGTGCTACGGGTTTCCCAGGAAAGTAAATTATTTAAGCCCTCAGAAGAGAGTATCAGTCGAACAAAGCCAAAAACCCCAAA # Right flank : GGAGGCTATGAAAAGCCCAATATATATTACCCAGCCCGGGATATTGGAGAGAAAGGCAAATACAGTTTTCTTCGTGAACGAGAACGGAAAGAAAGCTTTGCCAATACAGAACATAAGTGAGATCCACTGCTTCGCTCCCACAACATTAACCAGTGGGGTAATAAAGCTACTTGCAGATAACGACGTTCCCGTGCACTTCTACAATAAGTATGGCTATTACCGAGGCTCCTTCATGCCCGCCGAAGGCCAGATTAGCGGAGCTATAGTGATAGCCCAAGCCTCCCACTACCTCGACAAAGAGAAGAGAGCCTATATAGCCAGGGAGTTCCTGAACGGAATAAAGGCCTCGATGATAAGGCTACTCAAATCCCAGAGCGTGGACCCAATGGACATTGAGGAGATCGAGGTAAGAGGAGAGAGCGCCCAGGAACTCATGGGGATCGAAAGTCAGCTATGGAAAGCATTCTACGAAAACTTTGCTGGAATGCTAAAGTACTTCT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTCAATAGTGTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 701102-701606 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 701102 30 100.0 36 .............................. TTGGGAGAACAATAAGACCGTTCCCACCGGGCTTCT 701168 30 100.0 36 .............................. TGGGAGTTTGAACATACCGATTCTGAATACATACTC 701234 30 100.0 40 .............................. TGTTGCTGACCCAACCACCGACGATAATTAGGTTCTTATC 701304 30 100.0 36 .............................. CGATGTAAATCGATGGCTCGGCCCAGTAGAGCCTGC 701370 30 100.0 37 .............................. ACACGGAGCTTGAGGGACATTGGATTAGATAGTGGGC 701437 30 100.0 38 .............................. CCAAGATGTACAGCCCAAACTGTCTCTCTTGACTGTCG 701505 30 100.0 42 .............................. TTGGCAGTTCCTGAAGAATTTTATTAAGCTCTTTAGGTTACA 701577 30 80.0 0 A.A.G.C.............T..C...... | ========== ====== ====== ====== ============================== ========================================== ================== 8 30 97.5 38 GTTACAATAAGACTAGAAGAGAATTGAAAG # Left flank : AGAGTTCGGATCCCGAAAGAATTTGTCGAAAAATTTTAGAAACCCGTTAGGTTACTCGATTTTGCTGTTTTCTCTTGTTTTATGTCTTCATTTATTAAAACGGGGTGTCGTAAGCCAATTGGATGATTTTAGTTACTACATGTTATTATATTTCATAATGTGTTGTCATCTTATAATTAATGTTACGAAAATTTTTCTTTAATTTTGGAAATCTGTTCACGCCAAAACAATCATGGTCAAATCCAAATATTGGATGTTTAAATGCATTGTAGGACTGAAATTTATAAGTATTGGTTAAAATAGTGCTTAATAATGTCTTGAACTTCATTGTTGTGGAATATAATGGGCAGACATCATGGCCCTAAGGTTATGTTTGGGTGCTGTAATGCCCTTTCTATGCCTCTATATGTGGCACACCTTAAGCTACCCCTATTCGAAAAACTTATATTATCCAAGCCCACATACAGGAGAATGAACAAAATGAGGCAAAAATTTGGCCT # Right flank : GAGAGAGCTTGAACAGACAGGCTAGGAAGTTTTTAGAGTTGCTTTCTGCGGATTTAATTATCAATCCGTCGGACAAATGATTCCTCCATTTTTACACCTGTCTACCTCCAGCTGAACGGTTACGTGCTTTACTCCGTACTCTCTCAGGATTTCTTCGATCCTATCTATTATCTCCTGTCCCCTGCTTATTGGCATGTCCTCCACCGACACGTGGCACTCAAAGTGTACCTCATCCTCCCCAATCCTCCACGCGTGGAAGTGATGTGCATTCTTAACCCCAGGGATTTCCTCTATCCTCCTCTTTATCTCCTCAAAGTCTAGTCCTGGGGAAGCCTCCATTAACACTTCAACGCTCTCCTTGAGTATGTAATATGCTTCCCTTAGGATGTAGAGGGCTATTCCAACTGTAATTAGAGGATCTACCCAGGAAACGTTGTACTTCAGCATTAGAAGCCCCCCAATGACGACGGCCATCGAGGATAGGGTGTCGCTGAGCAGGT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACTAGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 949045-949677 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 949045 30 100.0 35 .............................. TCGTTCTGAAGAAGTCTTGGAGGCTGCCAAACAAC 949110 30 100.0 37 .............................. TGTTGATCTCATAATCAACTTTGATCTCAATCCTTGG 949177 30 100.0 36 .............................. TTATGATCTCAAGGGCTGTTGCTTGTGGATTTGATG 949243 30 100.0 39 .............................. GGGGACCACTGACTTATTGGCGTGGTAACTAATATATCA 949312 30 100.0 37 .............................. ACTATTATCAGGAATTCTTCAAGCATGTGTCTTAGGA 949379 30 100.0 36 .............................. TACAATGTATCCATTATCCTTTCCAAAAACCTTGGC 949445 30 100.0 36 .............................. GCAGTCTTTCTGCACCACCTCGTCAATGTGCTGAAG 949511 30 100.0 38 .............................. GAAATACAAGCGCTACACAGTAACATTCTACGCATACG 949579 30 100.0 39 .............................. TGGCTTCCTCTTTAAAGCGAGAAGTTAGGACACCGTCAA 949648 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.7 37 GTTCCAATAAGACTAAAAGAGAATTGAAAT # Left flank : ATGCCATAAAGTTCCCTAGTGAAATCGAAAAATCTTAGATACCTTTTCTGCTCTCTTGTTATTTTCATTAATCCTGTACGAGCTGTGGAAAAGGGAAAATATTTGGTCTACGCTGATTGGAGGTGTTTAGTAACCATTAGTTACTAAATGATAATAGGTTACATAAAATGCTGGATGGTATTACGAAAATTTTATGATAATAATTAAAAAGCATTTTAAAGGCAGATATAAAATGAGACAGGTACGAAGGATTTTTGGTACTATAATTAAGAGGTGCTTTATCTTTTTACCGACAAAAATGCTCCCTAAGGTTGCATAAACTGCAGAATTAAGAGGGAAAGAAGCAGAAAGAAAAATGCCCTATAAACATATTTTGCAATTCTTGTAGGTTCTTTTAATTTTTAAGTTGGGAAGGGAAATAAGAGAACCCTTGCCAAAAAGTTTATAATATCGGGGCTTTCTTAGGGGATATCAGGAGAATTGCACGAAAAATCGCGCCT # Right flank : GGCCTTGTATGAAATCAGCTACCTCTCCAGGAACATAAGGCTAAAACTAGGACTAATTGAAGGAGTAAACGCTACTCCCAGCAAGCTCATGCGCTTTTTCCTAATATATCATAAATTTAGGCATAGACTAAAAGAATAGATTAATAACAGCAAAAAATACAAAGGAAGTCACATAAACTCCTCAAGCTCAAGCTCCTTGAGCTTCTCTTCTGGAATCCTTCCGTCTTCTGTCCATCCTCTGAACTTATAGTACCTTGGTAGCATCTCCTTAAGCCTGACGACGTGTCCCTTGTGTGGCCCTTCTGGCATTGGCTCTTCAAGGAGCCTCTTAGGTAGTGTGTCTTCCTTGAGTGGGTCAAGGCCGGCTTTAAGGTTGAATAGCCTCTCAGCGTTCCATATTCTCTCTCCTATCTTAAGATAATCCTCGGTTGAGAAGTCCCAGCCAAGTGCCGCATTTAGGAGATCCCTGTAGTCATCAGCACCTAATCCAAACGTCGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 985040-984667 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 985039 30 100.0 36 .............................. AGGAGAAGGTCGCAGTAGTCTTCTGGACGCCTGTGA 984973 30 100.0 36 .............................. TGATGAGAGAAAGCGCTCTTGCGAAAGTCATACCTC 984907 30 100.0 37 .............................. AGGGCAATAAGAGTATCATCAAGGCTCGCGAATAGCT 984840 30 100.0 38 .............................. CATTGTGGGAGGAATAATAGCAATTCTGAGGAGGTGAG 984772 30 100.0 46 .............................. CTCGAAGTCGAGAAGATGAAGCTGGAAGAACTTCAGGTTCCAATAA 984696 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 6 30 100.0 39 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : ACTATGTACATGTGGGGCACCGAATAGTATTCAATGCAAGAGGATATTTCTTCTTTTTGGATATATGCACAGAGCAAGGCTTAGTTTTCCTCAGTAGGGTCGCTATTCTCTCTGGAGGTTTTTAATAATCTTGTGTTAGAAAATTACATAGTGCAACAAACAACTGATTATTTTGTAACTAAAATTTTTTGGCAGTATGGTATTAGTTTTGTCCTGGCGGGTTTGATGTAGCAACTAGGTATAATTTGCATTAGAGGGTAGGGCATGGATTTTATCCTCATATTGGCTGTAATATCGCATGGATAGGCTTTGGAGTTTACCATCTCTAAGTGCTTAAAAACTGTTCGGGAAAGATAGTGTCTTTAACCTGCCATTTCGTGGCGTTTAGTCCTCCTTTTATTGGGTGCCTCTCTGCTTTTAAATACCACCATCAGCGAAAAACTTATATTGTAACAGTTTTCTTACGACTATTTGATGCGAATCGAGCAAAAATTGGGCCT # Right flank : ATGTCCACTACGTGGACAAGGACGAGGGTCTTCGCTGGGGATGTATCCTCCTATTGGTGTGAGCTTTCTGGGTTTAGCTCTTCCTTTTTGTTAGGGCGTCGCTAAGAAAGACAATAATTTTTACTACTAATAAACAAAAACAATAAAAAGTCCTTTGTTTTTGATTTTAGTGGATAAAATCCTTGTTATTTTATTTTACAGCATGTTTAGCTAGTATTTAGATTATTTTGCTTCTATGTGCTGAGTACTTAGGCTGCTAATTTTTCCAACTCTAAATCAGTAAATAATGCTGTCGTTTAGTTATTTTTATTGGCGTTAACTGAATAAATGGACAATAAATTAATCAAATAACTGGTAATTCAACAATAAATAACCAAGAAAATTTAATAAACATCAATTTTTCCTAAGGAAATCAACTCAAAATGAAACACCTCTGGGGATGAGATAATGTCAAAATGCAAATACTCCAAAAGACGGTTTGTGTACAGTACTGAGTGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1182958-1180895 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 1182957 29 100.0 41 ............................. AGTGAGTCCCTAGTAAGGTCAATTGAGTATCTGAGAGCGAC 1182887 29 100.0 41 ............................. CCTTTTTAGCCCTTTCCCTTTTCTTTGGGGGTGCGCCGTTT 1182817 29 100.0 38 ............................. CTGGCGAGATAGGATTTTAGCGCTCACGTTTCCACCAT 1182750 29 100.0 47 ............................. TCTTCCTTTCTCTTCTCCAAATAACTAAGCACGTCCTCCACACCCAT 1182674 29 100.0 42 ............................. AGGGTTTGGAAAAATTGCAGATGTTGGGACTCAGCTAACTGT 1182603 29 100.0 39 ............................. CAGTTCGTACTTGTGTAGCTCAGCCTCTAAATCGCTCAC 1182535 29 100.0 45 ............................. ATCTTAGGCCGTAAAGGTAGGTTGCTAAGCCTAAGCTCCTATCGT 1182461 29 100.0 37 ............................. ATTAGCCTCTTGATCTCATTGTTGTTTTTGCCAGTTT 1182395 29 100.0 36 ............................. CTTCCCTCCTCGCCTCAACACTTGCGGCCGTAAACT 1182330 29 100.0 37 ............................. TCAACATCGACCCAGAGACATACAAGAGCGAGAGCAA 1182264 29 100.0 52 ............................. CCATCCCTACTGTCTTTGTTGTTTCTAAGTCTTCTCTATTTCGTTTCCGTAG 1182183 29 100.0 40 ............................. TTCTCGATGAAGGTTTTGTCGGCCCAGTCGTGCAGTTCTG 1182114 29 100.0 43 ............................. TTCTACCCCGTCCTCATATATCTTGTATGTGATTTGGTGACTA 1182042 29 100.0 35 ............................. CGAATGTTACGTCTGTTGACCCATTTGCGAACCTC 1181978 29 100.0 37 ............................. ATGTTTGTCCAGAACTCTAGTACCACTCCTTGTTCAC 1181912 29 100.0 42 ............................. GCCGTTCTTTGCAATCACGTAGTCGCCGTCTTTGAAGATTAT 1181841 29 100.0 40 ............................. AATCGTAGTAATAAGTAATCCGAATAGGTTTGCCAGTTTC 1181772 29 100.0 38 ............................. CAAGTTTGCAAGTAAAGATGAGGTGGCGGAATTAAAGG 1181705 29 100.0 36 ............................. TGGACGTGGAAGCGTATGCAGACCCCACAGTCTCAG 1181640 29 100.0 43 ............................. ACCAAGAACCCCTCCTGCAGTATCCTAGCAAATGTTGGCGTGT 1181568 29 100.0 41 ............................. GACACTGGAACAACGACCCTCGGGAGTATTGCAACACCCTG 1181498 29 100.0 37 ............................. AGCTCGTGGGTGCAGAGAAGACTGTCGAGAACTACCT 1181432 29 100.0 51 ............................. TCTTTTGTCGGGATTGCCGCCCATAACACCGCAATTCCATATCTCGTTCTC 1181352 29 100.0 36 ............................. GCCTCCTGCTTGGCCTTTATCTTCGCCTCGATGGCC 1181287 29 100.0 36 ............................. GGCAAAGGGGACTTGGGGGAGAGTAGGCATAAGCCG 1181222 29 100.0 47 ............................. ACCTTCCAACCGCTCCTCAGCGCCTCCGCGATCAACTGTTTGTTTCC 1181146 29 100.0 48 ............................. AGGAACTCGTCTATTGCTGTTTCGTCCCCTTCGTGCCACCTCGTTTCC 1181069 29 100.0 51 ............................. CCGGTATCTTGACTGCGCTCCTGCCCGGCTTCAGGCTTACCGTCGCCCCTC 1180989 29 96.6 37 ..............C.............. TACAGAGCTTTTTCTTTGTATTCCATGCCCATATTAT 1180923 29 93.1 0 .................C...C....... | ========== ====== ====== ====== ============================= ==================================================== ================== 30 29 99.7 41 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TTTTTCATGTGTTGGTTTTGGGTTTGTTGGTGTTGTTTTATCCTATTGAAGGCCTGCTCGGGTCTAGAATTCCTGATTAATAGTTTAGAGGAAAGAATACTTAGTTTAATTCGATATTATAAACTTCTGCTTTTGGAGTATCTTATCAGTGGTAATTTGCTGGACGTTTTAGCTAACTGGATGGTTATAACTTCTCCTAGCCTTATTCTTGATTTAAAGTCCTGAGACCCTTAAATCGGATGGTCTAGGAGTTCTAATTAACTCACGTTTTTGAATTAATTCAGTGCCTCGAACTTTTTTCTGGCTTATTCAATTTCGATTGTTTGAAAGTTAATTTTACGGGTTTGTAGGAGTGAGTTAATGGATTATTGTCATTTTCTGGCCCCATTATTTTCAGGGTAGGTTTATAAAGGAATGATAGTGCTACGGGTTTCCCAAAAGGATAAATTATTTAAGCTCTTAGAAGAGAGTATTAGTCGAACAAAGCCAAAAACCTCACA # Right flank : TCACATCGCTGTCGGAAATACCCACTACAAAAGAAATAATAAATATCAAGGGGTAATAGAATAGTGTGGTGACCAGTATGGACTTTGTACTGTTTATGGAGAAGTATGGGTACAAGATACTCCTTGTCGCTGCTTGTCGCTGCGGTCACACTAATTGAGATAGTGTTCGCCGGGCCAGTAATAATTGCATACGTTGGTGGAGGAGTTTGGGGTATTATCGTCGTGCTGTTGGTGTTCTCAGCAGTCGCACTGTTCGGGTTCGTCTCGAAAAGTTATAACCTGGTTAACAGAATCTTCCACGCAAGTCTACCAGGCGATATGCATGAGGACATAGAGAAGGAACGTGAAAAGAAGCATGGAATATAGTGAAAAAAATGTTCTTATAACTGATCAACATACTTACTGTCCGATGAGACGGTATGGTGTTGACGGATATTCCCGGCTTCCGTAGAATTAAAAAGTAAATGAATCAAGCTATCGACCATGGAGGAGTGACATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 1642828-1643723 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1642828 30 100.0 35 .............................. GCTGACGTGTTGACGTGGAGCTAATTCACTTTATT 1642893 30 100.0 37 .............................. TTTATCAATGCCCCGTACTCCACGTTGGCCTGTTGGT 1642960 30 100.0 35 .............................. GTTTGGGTTGATAGCGGTCTTGGCAATAATTGCGG 1643025 30 100.0 36 .............................. TATGTGAAAGTCTCAACTACAGGTCTAACACTTAAT 1643091 30 100.0 36 .............................. GAGCTTGTGGTTGTTGTTGGGGTTGGGGCCGGGGTT 1643157 30 100.0 36 .............................. GAAGATGCCCTTGAACCTCAGTACCTTGCCACTCTC 1643223 30 100.0 36 .............................. CAGGGTTCAACGATTGATTCTGCTGATTGGAAGGCT 1643289 30 100.0 37 .............................. CAGTTAGATTTTCGATTGGAGGAACTATACTGATTGT 1643356 30 100.0 41 .............................. GCATCCGTTGAGGACGCGGAAAGAGTCGAGGAGCTGATCGC 1643427 30 100.0 37 .............................. GATTTCTCTTTTCTTTGGGGGTGTCACTATGGTGGAG 1643494 30 100.0 37 .............................. AGCACACCCCGGTGTAGCGCTGGTAGATCTCGGTCAC 1643561 30 100.0 37 .............................. GACGGGTGAGATAGTAGAACAGATGGCCATACCAGTT 1643628 30 96.7 36 ...............A.............. ACGTTTGGTTCAGTCTTCACACTGAAGGATGGTAGT 1643694 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ========================================= ================== 14 30 99.5 37 GTTCCAATAAGACTAGAAGAGAATTGAAAG # Left flank : GATGGCACAATTGGTTCCTGACATCTGAAGATATTTAGAAGCAATAGTAGATGCCCCAATTTAAAAGCTATCGCCCTTTTGATGTTTTTCTCAACTATTACAGCCCGGAAAAGCGTTTGGATGTTTTTGGTAATCTTTTGTCACTAAATACCAACATGCCCAATATAGCATGCTAGAATATTACGAAATATTTTTGAAATTTTCAGATTTAAGAGAAAATCGCTTTAATATAAGTGTTCGAGCGTATACATCGTTGTTCTTGGTAAAAATACTATCTAGATCATGAATTCGCAGTACAAAGTGGGGAGTAACCTTTGCACGTCCTTAACGCTGATAAGAAATATAATCAATACTGCCCACAATCACTAATTTCAGCCAGTTTGTCATCCCTTTAGTACAGATATTTTCATAGGGTTTTCATAACTCCCCTTCAGCAAAAAGCTTATATTAATAGGGACACCTTAGAAGAGTTTAGACGAAACGAGAGAAAAATCGCGCCT # Right flank : GCGAGCCAAATACTCATAGGTTCTAACTGGGAAAATAATGAAAAACATCCATATTTATTTAATTAGCTTGGCTATTTTCCTGGATAATTCATCAAGAAAAGCCATAAACTCCTCTTCATCGTACATTACTAAATTTTTCTTGTTCTCTATTTCTCGCTTTATTTCAAGAATCTCTGGGGGAACTTTGCCATATTTTTCCATTATTTCTATAGTTTTAATTGCAGCATCAAGCAATCTTAGTGGTCCATATAGACATGGTTCACCTAACAGTCCTCGAGCACTTGTTATAAGAAAGACTATTAATTTAAAATGGTCATCATTCAATAACGTTTCCGTATTCTTCAAGATGCATCACCTCTTTTCGTCTTTTTGGAGGCTTCGGCCAGAATTTTGGATATCCAAGGGTGAGTATCAGAACTGGATCTACATGTTCTGGAATTGATAATATTTCCTTAACTGCAACTCTATTAAAAGAAACAACTGGACAAGAACCAATGCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 8 1747136-1746089 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN999010.1 Thermococcus chitonophagus isolate 1 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1747135 29 100.0 44 ............................. ACGCTAATATGTACGGTGGCTTCTCCGGGCACATGTAGCTCCCG 1747062 29 100.0 36 ............................. TCGTCTCTTGGCAAGCTTGTAGTCAAGAACTACGCC 1746997 29 100.0 39 ............................. AGAATAACACCATCCTTGTCAATTTCTTCTGCGACAACA 1746929 29 100.0 46 ............................. TTGCTGGAAGCCTGTCAATGTGGAGTTCTGGTCCCCTCGTGCCCCA 1746854 29 100.0 39 ............................. CACCTCACCCATCCCGACAGCCCGCACCACCCTTCCCGC 1746786 29 100.0 47 ............................. CACTCACAATCGAAAAGCCCAACGAAATCGTGATAAGTTTCCGTAGA 1746710 29 100.0 38 ............................. ATGTCTAGCCCGGGGTTTTCGCCCACCCGGGCCGAACC 1746643 29 100.0 35 ............................. CTTTTCTTTGGGGGTGCAGCCATGAGGAGGGTGTA 1746579 29 100.0 47 ............................. TTCCACCCCCACTTCTCAGCCCCGGGGCCTGAGCCGGGCTACCCCAG 1746503 29 100.0 49 ............................. GTGTAGTCCACTGATGCGTAGCTTACTTTTTGCTTTGGTATTATGAAGT 1746425 29 100.0 36 ............................. GAGAGGGAATGAGTTTCAACAAAATCATTAGTACAT 1746360 29 100.0 46 ............................. CCGAACTCCCTGATCTGCTGCCTCCTCTTGAAGTAAATGTCCCTAG 1746285 29 100.0 37 ............................. GGACAGGGCAAAGATGCTTGAAGACTTGAAGAAGTTA 1746219 29 100.0 74 ............................. AGGTAGGGCCAGTGGAAGAGCCGAAGGTGGACTGGGATGGAGCCGAGGGTGATACTGACGTTGAAGAAGGATGA 1746116 28 89.7 0 ..................G.G.-...... | ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.3 44 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TTTTTCATTTGTGTGTTCTTGTTTTATTGTGATTGTTTTGTCATATTGGAGGTCTGCTCGGGTCTAGATTTTCCAATTAAGGATTTAAGAGAGAGAATGCCTAATTTAATCAGAAATTATTGGTTTTTGTTTTAAAAGTATCTCATTAGTGGTAATCTGCTGGATGTTTTAGCTAACTGAGTGGTTATAACTTTTCCTAGCCTTATTCTTGATTTAAAGTCCTAGAAACCTTAAATTGGATGATCTAGGAGTTCTAATTAACTCGCATTTTTGGATTAATTCAGTGCCTCGAACTTTTTTCTGGCTTATTCAATTTCGATTGTTTGAAAGTTAATTTTACGGGTTTGTAGGAGTGAGTTAATGATGAACTCCCCGTTAATTCCTCTGTTATTTTCAGGGTAGGTTTATAAAGGAATGGCAGTGCTACGGGTTTCCCAGGAAGGTAAATTATTTAAGCCCTCAGAAGAGAGTACTAACCGAACAAAGCCAAAAACCCCAAA # Right flank : GATTTAAAATAAAAATCAAAATAGGACGGGGTTGCCCCCGAGTGGCCTCCCCGTCTGAAACTCATGAGGGCGGGGACTTGCCGTGAGGGGGCTTGGCGAACGCCGCACCCCCGTCCTGATCCTGCTATAAGGGTTAAGAAGAGAACATGGTCACGAAGACAATAGCCTCTAAATACCTCTGTTATTTTGCATTTTCTTGTGTTTTCCTTGTACATAAGCAAACCTTAACCTTAATATCTCGCCCTCGTATTAAGCTGTGGATGGACATGATGAAGATGAACCCGCTGATCTGGTGATGAGGGCGCTCATAGCTGATACACAGAACTGTCCCCTAATGAAAATCCTTTTAACTGAATTAGGCGAACCAAATTCTGGCGAGGCCACATGGAGTACGTCATAGAAGCTGAAAATCTCACGATAACCTATAATGGTTATGAAGCCGTCAAAGACTTGACGTTTAAATTGAAAAAAGGCGAGACTATGCTCTTGCTCGGCCCCAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //