Array 1 5430-6555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBN01000038.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N9110 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5430 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5491 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5552 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5613 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5674 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5735 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5796 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5857 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5918 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5979 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6040 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6101 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6162 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6223 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6284 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6345 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6406 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6467 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6528 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22814-24477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBN01000038.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N9110 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 22814 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 22875 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 22936 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 22997 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 23064 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 23125 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 23186 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 23247 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 23308 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23369 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23430 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23491 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23552 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23613 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23674 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 23735 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23796 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23857 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23918 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 23979 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [24021] 24021 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24082 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24143 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24204 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24265 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24326 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24387 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24448 29 96.6 0 A............................ | A [24474] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //