Array 1 3840048-3840726 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVU02000001.1 Synechocystis sp. PCC 7509 SYN7509DRAFT_scaffold1.1_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3840048 37 100.0 34 ..................................... TAGACGTTGGATTAGAGTTTTTCTACTCAGATTC 3840119 37 100.0 33 ..................................... GATTGGGAGTTAGCCGCAATGCGATCGCGTAAT 3840189 37 100.0 35 ..................................... AAAAGTTAAATGCGATCGCACATTTTTTAGAGCGG 3840261 37 100.0 33 ..................................... CCCAACTTCCCGGTGGTTGCGCTCCCAAAATTA 3840331 37 100.0 32 ..................................... AAGTTATACGAACCCCAGCGTAAATTATGCCG 3840400 37 100.0 34 ..................................... AAAGAATGAAATTTTAATGAGTCAGGAGACAACA 3840471 37 100.0 35 ..................................... ACGGATCTCAAAAGCAATCGGCAAGAATAACTGAA 3840543 37 100.0 36 ..................................... TTGCTGCTATATCTCCCAAGCACAGTTTTAAAATAC 3840616 37 100.0 37 ..................................... TTCGGCTGACTGCCCATTGATAACCCGTTTAACAGCA 3840690 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 34 GTTTCAATCCCTGATAGGGATTTGGATTAATTGAAAT # Left flank : AAACGCATCCAGCAGCGCCGCCAAGAGGTGCAAACTAAAATAACTGAGTCTCAAGCAACGCGCAATAGTTACGGGGCTTCTCAGCGCCTAGAAACCGCCGGATGGAATCAAGCCCGTACACCCTACGGCGCACCAGATGATTTAGATGATGCTTTTCGCCGTTGGGAAACTCAAGACGAATTAGAGCAGATGAAGCGAAATATGGGACGGTAGAATTATTCGGGCTTTTTGGGATGTAGGAGCGCCAATACTTCATCTTTTAACGGCAACAAAAAGCCCAGGCGCTTATCTGTGTTAGAAGCCACTGCCAAAACTGCCCCGCCTAAAATATAAAAAGGCAGTGGTAAAGTTACATTTTGCGCCCATTGATAGAGTTCAGCGATCGCAAACAACACTAAAAAACAAGATAACCAAACTTTCATATTGACAGGTGGGAAAGGTTTTGTTGAGCTTGTAAGCTCACTGTTGAAGATAATAGCGGTATTTGACTGTAAGCTTAT # Right flank : TAATTGATATAGCGCTACGGGAACACGTTAGGACAGTGTTTAAAGGCGGCATCTACACAATCATGAAAGTTGTCAAATTCGTTCCACCGCTGCCGCATCCAGTTCTTGAGTACAAACCACCAATGTTCGATCTTGTTCAAGTCTGGAGAATAGGGGGGAAGATACCATAACTCACATCCCGCCTCTGCTACAATCTCGTCAATTGCCTGGGAGTGATGAAAACTTGCATTGTCAATGACGATAACATCACCTGGTCGCAATTGAGGGATAAGACACTGCTCTAACCACATCTCGAATAAGTTACGGTTACAGGAACCCACAAATGTCATTGGTGCAAACACTTTCCCTTGGCGTAGTGCTGCGATCCAACTGACACGCTCAGTACGCTTACCAGGTTTGAGAGCATAGAAGCGTTGTCCAACCTCACAATAACCATAGGGATAGTCATCTCGGTTGTCAATCCCTGCTTCATCAACATAGATGATTTGAGCAGCAGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTGATAGGGATTTGGATTAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 3850285-3841712 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVU02000001.1 Synechocystis sp. PCC 7509 SYN7509DRAFT_scaffold1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3850284 37 100.0 35 ..................................... GAGATAGGCGAAAAGCAGTGTTTTGAGTTCTCCTA 3850212 37 100.0 36 ..................................... TAATTTACCTTTGCTGCTTATACATGATCGCTTTCG 3850139 37 100.0 37 ..................................... CCAGCATCATCGGCATCCTTCATGGCGTTAAGAGCAG 3850065 37 100.0 36 ..................................... GTGTCCTTGGGTGTTGCTGTATCGGTGTATGGAACT 3849992 37 100.0 34 ..................................... TGGTAGCCTATAACCGAGTGCGTATAAAACTGTC 3849921 37 100.0 36 ..................................... TAAGGTCAAAGAGTCGCCAAGGGTATCAGAGGCGAT 3849848 37 100.0 37 ..................................... TTCGATAGCAGTACCTAATTGAGACAAAATGTAATTT 3849774 37 100.0 36 ..................................... TCGCTGCTTGCAATGGGCAAACAGTTCTACCCGCTA 3849701 37 100.0 35 ..................................... TTAGGGTATTAGATGTAAAGTATCTCTGTACTTCC 3849629 37 100.0 36 ..................................... ACTAATATCTTTAGATCCTCCCATGCCCCCAAAAAG 3849556 37 100.0 35 ..................................... GTATTTAGAACCATCGTAAAGTAAGCCTGTAATCT 3849484 37 100.0 36 ..................................... AATTCTTTAATCCAAAAGGCAAAGGAACTAGAAAAA 3849411 37 100.0 34 ..................................... AAAAGGTTAGGCAATAATCAAGAATTATCAACAA 3849340 37 100.0 35 ..................................... AAGGATGCGCTAACGGGTTTGGCGGAAGTTCAACT 3849268 37 100.0 38 ..................................... ATGGCATTATTAAATAAAGGCGCAATCAAATGGTATCC 3849193 37 100.0 34 ..................................... AGGTTTAAGTAGAAACATAGGGCTTTGAGGTAAA 3849122 37 100.0 37 ..................................... CCAGGTGTTGGCGATCGCGTTCCTCATCAATTGACAA 3849048 37 100.0 36 ..................................... CTTTCAATTAGGGCAGAAGTGTAGTCTTTGCCGTTT 3848975 37 100.0 35 ..................................... TTGACGTACAGACGATGAAGTGGGTGAGGGGAAAA 3848903 37 100.0 36 ..................................... GGATCGCTCAAACTACCAAGGCGATCGCGCACTTCA 3848830 37 100.0 35 ..................................... ATCAGTTTTTAATTTCCTTGCTTGCTTCTTCTTTA 3848758 37 100.0 35 ..................................... TGCAAAAGATAGGCGGCTTCTATTCGGCTCTAAAT 3848686 37 100.0 34 ..................................... TCCGATGATAGATCATTGCCATACAACAGGAATG 3848615 37 100.0 34 ..................................... ATAATCCCCAAGGTGAACTGTTGCACTATCAGCT 3848544 37 100.0 37 ..................................... GTACAAAATAAGCGATCCCCGTTTTGATTGGGATAAT 3848470 37 100.0 36 ..................................... TATTATTTGGTGCGAGTTGAACAGTGAACAAGAGAT 3848397 37 100.0 33 ..................................... TAGTAACAACTTACTAGAAGCTGATGGGGTGAA 3848327 37 100.0 35 ..................................... ACCTAAGTCGTGAACTATGCGATTTTGAGTGACAG 3848255 37 100.0 35 ..................................... GACATAGTGGATTTTTAACTGAAGTCTAGGCTTTT 3848183 37 100.0 36 ..................................... TTGCCGATTCAAATGAATCAACTAAACGCTCTTTAC 3848110 37 100.0 35 ..................................... GATATTGAATTTAGGGGAAAATCGTGTTTGAAAAG 3848038 37 100.0 33 ..................................... ATCTCAGGCGCTTACGATGCCGCTCTTAAAGGC 3847968 37 100.0 33 ..................................... TGAAACTCAAGGGATTTGTTGCACCACTTGCAA 3847898 37 100.0 36 ..................................... AGGTGCAGTTAAAGCTGAATATGTGAGTAGCACAAT 3847825 37 100.0 35 ..................................... TCGATTGCGGCATAGGCGATCGCGGCGGCAATAAG 3847753 37 100.0 32 ..................................... ACAAAAGAAGCGCCTTGTATTCATTGTCGAAA 3847684 37 100.0 34 ..................................... TCCCTTTTTAGCTGATTACCCCCAAAGGTTTCCT 3847613 37 100.0 34 ..................................... TTTTAGTTTGCTATTCTCTAGGTCATCTATTAAG 3847542 37 100.0 37 ..................................... CATCAGCAATTTTGTTACCAATCTTCCGTTTATTCCT 3847468 37 100.0 35 ..................................... TTCTTTGGTGATACCTAAATCAATCAAAGGATAAG 3847396 37 100.0 35 ..................................... ACCTATTTTCCCCGTGTACTCTGCTCCTTGCTCAA 3847324 37 100.0 34 ..................................... AAATGCCCAAGCTGCTTGCAAAGCCTCTACTAAG 3847253 37 100.0 36 ..................................... GGAGTAATTCTTGCTGATTCGCCAATGAGTAATGAG 3847180 37 100.0 34 ..................................... ACATAACCGCCACTGACAGTGACGGTATTAAGTA 3847109 37 100.0 35 ..................................... GAATACCTCTTTAATCTTGCGATCGCGTTCGTGAG 3847037 37 100.0 35 ..................................... CTGCCTCTAGGTAGCACCGTAAAAATGAGGGAACA 3846965 37 100.0 36 ..................................... TGATGACAAGCTCACAAATTCTAATCCTTGCACTGC 3846892 37 100.0 36 ..................................... AGTAGGTTTGACAAAAATGTAAAGGCTGCAAACCAA 3846819 37 100.0 35 ..................................... AATTTTCCGGCGGCGCTGCAACGGCTCAAAAAAGC 3846747 37 100.0 34 ..................................... TTTGTCAAAGCTGGCTCAAACTCCACAATTAGGT 3846676 37 100.0 37 ..................................... GCTACAGAGGATTCTAGGATATGTGAATACTGCGCAG 3846602 37 100.0 36 ..................................... GAGACTACTAGAGTAAAGCAAACTAAAGTTTTGAAA 3846529 37 100.0 34 ..................................... GGGTTTAATACAATACTGAAAGGCTACAGAAAAG 3846458 37 100.0 36 ..................................... TCGTACTGCTGAACTTCAAAGGGAAGATCGATTATA 3846385 37 100.0 35 ..................................... GTCTGTACCAGAACACCATCCAAGTATATACGATA 3846313 37 100.0 36 ..................................... TGATCGCCTGTACCGGTTCTATAATCTATTTGAAAG 3846240 37 100.0 34 ..................................... TTCTTTACACAAAGAACTAAGGTAATACTTCCTA 3846169 37 97.3 34 ..........................A.......... GCTTTGCTTTAATCTCGGCAATTCGTGATTCAAG 3846098 37 100.0 35 ..................................... CAATGGACAGAAAGTCATCAATTAGCCGCCCAAGG 3846026 37 100.0 38 ..................................... GTTAAGGTGCAAGCTTTGGTGTTACAGAGCTTGCACTG 3845951 37 100.0 35 ..................................... CTGTACCGCCTCCTGGTAAGCCAGTTGGGATCATC 3845879 37 100.0 35 ..................................... CCTATCGGGATGGAAGCCTTAATAAGTGAAGCTTA 3845807 37 100.0 36 ..................................... ATTGCAGCAGTAGAAGTCACAGACGAATAACTAGCT 3845734 37 100.0 35 ..................................... ATAAAGTAAGCAGCTACGTAGTACGGGCGATAGAC 3845662 37 100.0 35 ..................................... TAATGTTCTTAAACAATTAGCTGTATTAGCTAGTA 3845590 37 100.0 35 ..................................... TTTGATCCTGAATACTCTCAACTATGTGGAGTAAA 3845518 37 100.0 37 ..................................... ATCAAGATTGGCTTAAAATAGGTAGAATTGTTAAAAA 3845444 37 100.0 37 ..................................... CTTTAGATAGTAATATTAAATCTCATGGTAGCTCTAC 3845370 37 100.0 34 ..................................... GTGTTGGTGTGCTTTCGTTTCTTTACTCTTTCAG 3845299 37 100.0 34 ..................................... CCATTTTAAATGCTGCAAGCAATAGTCGAAAAAC 3845228 37 100.0 35 ..................................... CGGAGCAATTAGCCCTTAATAAAGGCATCTTAAAG 3845156 37 100.0 36 ..................................... TGGCAGTGATAGCAACTATGGGTTGTACATGGCATC 3845083 37 100.0 35 ..................................... CTATAAACAGTAAAGGCTTATTTGCGTCTGGGGCT 3845011 37 100.0 37 ..................................... AATAAAGAAGCAGCAATTATTAGCGCTACCAATACCT 3844937 37 100.0 37 ..................................... CTTTTTTTCAGTGAATTGCTCAAAGATTGAAGCAATT 3844863 37 100.0 36 ..................................... GGGGCAGAAACCATCGAAAAGCTTTGGATACTTTGG 3844790 37 100.0 35 ..................................... ATGCGATGCTTGAAGAAAAAGTATGTGACCCTTTT 3844718 37 100.0 36 ..................................... GCTGAATTTCCATTCTCTTAATTCTTCAATATATAT 3844645 37 100.0 35 ..................................... GGATTTTGTATACCAACTTATCTCCATACTTACCA 3844573 37 100.0 37 ..................................... TTAAATGATATACAATGCGATGAAAATGTAACTCCAG 3844499 37 100.0 35 ..................................... TTGTTAACTGAAGAAATACCACCAAAAGTCTGTAA 3844427 37 100.0 36 ..................................... GTGGTGTGCTGGGTTGTTGTTTCTCATTAGTTTACT 3844354 37 100.0 36 ..................................... GTCAATTGCCAGAACCACAAGTTGGGCCGCAAACAG 3844281 37 100.0 34 ..................................... TTAAGGTGCGTAATTAATAAGGGTTATAGCTAAT 3844210 37 100.0 36 ..................................... TTAATACACGCGCGCGATCTATATATATGTTCGTGT 3844137 37 100.0 35 ..................................... AAAGGCATTCAATCCCACGAAGTGTATGCAAGATT 3844065 37 100.0 37 ..................................... ATTTTTTGAGGTACAAATAAAAAGCTTATAAAAAAGC 3843991 37 100.0 37 ..................................... AAAAGCGATCGCCTGGATTTCTTGTAAAATTTTTAAG 3843917 37 100.0 35 ..................................... TCTGCATATCTCTAACTTGCATTTGGGGCATGAGT 3843845 37 100.0 35 ..................................... CAATTCCCTTTTTTCCATCTACTGAGCCAATGGAA 3843773 37 100.0 36 ..................................... AGGGCAAAGATAACAAGCAAATAGCTATTCAATATT 3843700 37 100.0 35 ..................................... GAGCTTTGCTGTTGCTAATAAACAAAGAGTAAATG 3843628 37 100.0 34 ..................................... GCATAATATTCCGATTTCGCCTCATGACGATATG 3843557 37 100.0 36 ..................................... AGCACTTTTGATAATTACCGGCTAGGGGTAATTCTC 3843484 37 100.0 36 ..................................... GTGCTTTGATGAAAAGTCTTTATGTCTCGCGTTAGC 3843411 37 100.0 35 ..................................... ATTGATAACCGCATTTACAGAATAGCCAATAGTTG 3843339 37 100.0 35 ..................................... AAATAATTGAGGCAGTAATTATGGATCGTATTCAA 3843267 37 100.0 34 ..................................... AGCTACTTTATTAAATAAGGTACGCGATCGCACT 3843196 37 100.0 33 ..................................... GAGCAAGCGAAAGCGCATCGCGTAAACTACTTG 3843126 37 100.0 34 ..................................... CCTTGAACATTCATATCTGCGTGGATTCCAAAAT 3843055 37 100.0 34 ..................................... AGATCCATGATTTCTATAATACTGCAAAAGTTCG 3842984 37 100.0 35 ..................................... TTGCAAATCTAGGAATAATATTAATGTCTACTCTA 3842912 37 100.0 34 ..................................... GTACAAAAGAAATTTTAAGTGGAGAAGAAAACAA 3842841 37 100.0 35 ..................................... GTGGCAAAAAGTACGCTAAATCTGGCTTTTCCAGC 3842769 37 100.0 37 ..................................... ATCACCTAAAAGAACTGTATAAACTTTCATCGGGAAA 3842695 37 100.0 35 ..................................... GCTATGCCCAATTGCCATTTTTAGCATATAAATGT 3842623 37 100.0 37 ..................................... AGAGCTATAGCCATAGCAGCAGCAGGAACACCAGAAA 3842549 37 100.0 34 ..................................... AATTCTTCGCCTTATACCGAATTAATAGATGAGC 3842478 37 100.0 35 ..................................... CTCTGCTTTTGATTCCTTTACAAGATTAGAAAATC 3842406 37 100.0 36 ..................................... TTCTAGACTTGGATACGCTACCTACTTTCGGCGCAA 3842333 37 100.0 38 ..................................... GTAAGGTGCAGCGCCGGGGAAACCAGAATCGTAGCCTG 3842258 37 100.0 34 ..................................... TTAGCTGCCTGCCCTCCATCCAGACATAACGGTA 3842187 37 100.0 37 ..................................... ACAGGCAGTGCTATTTTTACTAAGACTTTAACCAATG 3842113 37 94.6 37 ..........A.C........................ TTAGTGCAACTCAGGGAGATATTCATCAGCGCCAATT 3842039 37 94.6 36 ..........A.C........................ AACTTGTCTATATCGGCATTAGAAGGATGCATGGTA 3841966 37 94.6 37 ..........A.C........................ ATTGAGCGTCAAACCTTAGATCCAAACACTGGGATTT 3841892 37 94.6 34 ..........A.C........................ TACTATATCGATAGTTGCAGCCTGACCGCCTACA 3841821 37 94.6 36 ..........A.C........................ TCACCAATTATCAAATAATCAGAGATTAATTCAAGT 3841748 37 94.6 0 ..........A.C........................ | ========== ====== ====== ====== ===================================== ====================================== ================== 119 37 99.7 35 ATTTCAATTACTACAAATCCCTATCAGGGATTGAAAC # Left flank : AACGGAGAATAAGCGACGAACTAAGATATTCAATATTTTGAAATCTTACGGTCAATGGGTGCAGTTGAGCGTGTTTGAGTGTCCGAGTTTGACAGATACGCAATATGCTAAATTGCGATCGCGTTTAAGTAAGTTAATTAAGCCAGATTCTGACAGTATCCGCTTTTATTTTCTGTGTGCCTGTTGTCAAGGTAAAGTAGAGCGAATTGGTGGAGAACAACCCCGCGACGAGACTATATTTTTTGCCTCCAGCGCGGAGGGGTAGTTGTTTTAATTGAGATGAAGCTAAAAATCGCTGAAAGTCTTTCTCTATAGTAGTTTGATGGTACAAGGAGGCGGATGGGCGATCGCGCAGTGTTTGATAACTGGTGATGGTAAGGTTTTTAGGCGATCGTTCTTATGGATATTGACAACCTTTATCGTTTTGAATGGTATAATTATTTAATATCGCGCAACTGTACCTTGAAAATCAAATATAGTAAGATTTTCAGGTTTCCGTT # Right flank : CTTTTCTTTGGGGAGTCTTGGATTGCTATAGCCCTACAAATTCATATTAAGACATATAATAGAAAAACGAGAGTATCAAACAATACCTATGCCCGCCCCTTACAGTGAAGACCTGCGCCAAAAGGCGATTGCAGCAGTTGAGAGAGGAGAACGCAAAAGTGATGTGAGCCGGATGTTGCACATTAGTCGCAACACACTCGACCTATGGCTGAAGCGCAAGGAACAAACTGGCAACTGTCAAGCGATTACTCACTATCAACAGGGAAATCGACATAAAATCAGTGATTGGCAGAGGTTTCGTGAATTTGCGAAGCAACATGGAGGCAAGACTCAAGGGCAAATGGCTGTGTTGTGGGGCGAAGGGGTGAGTCAGCAGAACATCAGTGATGCCTTGCGTAAGCTTGGCTCAAGTCGAAAAAAAAAACCTATGGATACCGAGAGCGGGATGAGTTAAAACGTCAAGGATTTCAGGAGCAACTACAGACCTTATCTGCTGCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTACTACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //