Array 1 48077-48289 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQUH01000030.1 Streptomyces sp. M1013 M1013_C30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48077 29 100.0 32 ............................. GACACGTCGTCCGACATGATCCTCGGCGACGG 48138 29 100.0 32 ............................. CCGCTCTGCGTCCTGTGCACGCGGGCCCTCGA 48199 29 96.6 32 .........................C... GAGGTCATCGCCCAGGGCGAGCCCGCCACCTG 48260 29 72.4 0 .............GATG.T....C.A..G | G [48282] ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCCGGCTCACCCCGTGGCGGCGCCGTCAGGCAGTGCATGGGCCGGGGCAAAACCCGTACCCCGGGCGCCCCGGTCACCCGGGTCGCGCCCGTGGGACGGGAGAGTCGGTGGTGCAACGGCCGCTGGGTTGCCTGGACGAACAGACCGAAGAGGACGATGAACAGCAGCCCTTCTGGACGTAGCAGGCGCGTGGGGTCGTCCTGCAGCCATGCTCGTTTGCCCCACACGGCCCTGGCCGGTTCCCCAAGCCGACGCAACAGGCCGAAACGGGCGTTCCCCCCTCACTCATGGGTGATTCATGCAGGGAAAACCAGGATCGCCCCATCAATACCAGCAAAGAGAAGAGTCTGATGAGAGGCGACATTTCCTAGTCATATGATGATCAGCTAGTCATGGACGCGCCTACGGAACTACCCATCGCTTCATGTCCTATTTGTCGGAATCTCTAAAGCTTGCTGAAAACACGCCTCTACAGCCATAAACTCGCAGGTCAAACAGT # Right flank : GAGATGTCCCAGTCGATCTCACCTGCGGCGTCGGCCTCGGCCTGGACCTGCTGGAGCAGGCGTTCCCAGGTTCCGTCGGCCGACCACAGGCGGTGACGTTCGTAGGCGGTCTTTCAGGGGCCGAACCTTTCGGGCAGGTCGCGCCACTGAACGCTGGTTCGCACTCGGTGCAGAATCCCGTCGATCACCTGCCGGTGATCTCTCCACCTGCCGCAACGCCTGTTGCTGACCGGCAGGAACGGCCGCAGTCGTTCCCACTCGGCATCCGTCAGATCGCCCCGCCCCATGTTCACATCAACGAGACGACCGCACGGTAGTGACATGATCGACCGGACAAGTCCTAGGCGGCGAAATAAGCCAGGTTGAAGTCGACGGGAGAGCTGTTCCGGCACTCACCGTCCACATCTAACTAGGCTAGATCTCCATGTAAGTTGAGGGAAGCGGCTCGAGGTGCGACAGGGTCACATTCAAGCCACCTGTAAGGCGAATCCGTGTTCTCA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17804-21897 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQUH01000031.1 Streptomyces sp. M1013 M1013_C31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================== ================== 17804 33 66.7 26 .....A................CTCCGGCG.TG GGGAAGGCGCGCGAGGACGTCGCCCG 17863 33 87.9 26 ......................C......CG.G AAACCCACTCGAACTCCCCGGGCACG 17922 32 72.7 28 .A.TC...A...A....-...........GA.T CACCTTGTCATGAGTGGATGCTACGGGA T [17928] 17983 32 81.8 88 ................-.......C...CATC. TCGACGCGATGCGAACCCGGTTCCAGACGTCGTCCTCGCCGACGCAGTGTGCCTCGATCAGACGGGATGGTGCCCGTGACCGACGCTG 18103 33 75.8 28 CC....TT..........AA....C....A... GTAGGAGCTCCCCTCGGTACCGGTCGCC 18164 33 90.9 27 ...G..T........................C. GTCTTTGAGCTCCGCCCCGGTGGTGAG A [18193] 18225 31 78.8 28 .........A......-.C...-......CG.C GCTGGAGGTCGGAGAGGTCGACATTGCC 18284 32 84.8 26 ...........-..........G..C.G.C... GGGCTGCACCATGGTGAAGTAGCGGT TG [18304] 18345 33 78.8 28 .C..........A...........CC..AC..C AGTGCCGACCGTTCGCGGCGCGGTAGGT 18406 33 84.8 27 ........T.......T.A............TG CTGGGCGACGACACGCCCGTCCAGCGT G [18435] 18467 33 87.9 28 ......T.................C....CA.. CCAACGCCCGTCAGCGGCACGCGCTCGG 18528 33 84.8 28 ......G...............C.C....CA.. CGGTCGTTTCGGTCGACTGCCTGTACGG 18589 33 93.9 28 ...............................CT TGAGGCCGAGGGGCTGGTGCTGGTCGGC 18650 32 87.9 28 .................-...........AA.G ACCAGGCGAAGCCCACCACCCCCGACCG 18710 33 84.8 28 ..T..........................GTTC TGCCGTCGGTGCCCGGAGTCCCGGCGTC 18771 33 90.9 28 .............................A.CC TTTACGGCGCACCGCTTTTCGTGTCTTT 18832 33 81.8 28 ...T....................C....ATCC CCAGTGCCGGACCCTGGTACCCCAGCGA 18893 33 93.9 26 ...T..........T.................. CGCAGGGTCGGCCAGGTTGCGTACCA CC [18922] 18954 33 90.9 28 ..............................GCT GGCCTGTAGGGGCTTGCCTAGCGTCGAG 19015 32 93.9 28 ...-.........................C... TGTCCGGCCCGTTCGAGTTCGAGACGAT G [19032] 19076 33 90.9 27 .....T.........................TG CGACTCCTCGGCGGCGAACGTCGTCAG G [19105] 19137 33 81.8 26 .A..........C................GTTG CGGCGTTTCCAGGAGGAGGCCCTACG 19196 33 93.9 28 .............................G..G CCCTCAAGAAACTCCTCAAAGACGCCCG G [19226] 19258 33 81.8 28 .C..........T.........C......A.AT CAAGGGCAACCCCGACGTCGATTCCCTG 19319 31 78.8 28 ..............--...A.........GACC GCCAGGCGCTCATCGACATGCGGGTCGG 19378 33 93.9 28 ....G...........................C CGAGGGTCACGTTGCCGTTGGGGAAGAG 19439 33 87.9 28 .............................GGAC GGGCGGACAGGATGCGGAGGTAGGCGCG 19500 33 87.9 28 .......T.....................G.AC GCCCCGCATGTGGGCCGAGGTGAACCGG 19561 33 87.9 28 ........................C....AA.G TGTGGCGGCTGAACGTCGTCGAGACGAC 19622 33 87.9 28 ..T..............T...A.......A... CCGGCCACAAGGACAACCGGCCCTGGCG 19683 33 90.9 28 .........A..................A.T.. TCCCCGAGGCCGTGTCCGTGGTCATCGC 19744 32 87.9 28 ..............-..............CA.C GCCTTGCCCACGAAGCTGGCGCAGTCCG A [19767] 19805 33 97.0 28 ..............................A.. TGATCGGCAGCACGTCGGTGGGGTCGAC 19866 33 90.9 27 ...T................A..........A. GGCCACTTGGACGCAGTGCCAGGACAC A [19895] 19927 33 78.8 26 .C.G......T...A..............C.AG ATGGCGATCCGGTAGCCCCAGCCCTT GA [19955] 19988 33 90.9 28 .............CA.................G TGATCGGCCACCTGGAGTGGCAGCCGGG 20049 33 81.8 28 ........T...A.....A..........GTC. CCGGGGCGCCCCACCCTTCGGGGGACAG 20110 32 78.8 29 .....-.........A........C..T.CG.C GCGCCCCGGCCCAGCCGCGGCGCGAAGCG 20171 33 87.9 28 ..G.................A.........TC. TCCATGCCGCCCGCACCGGTCAGCCCGT 20232 33 87.9 27 ............................CGG.T GGGGCGGGGCCGGGGTGGTTAACCAGG 20292 33 75.8 19 ............T.........GCCGGT..A.. ACTGGAGGTTGGCGTCTCC Deletion [20344] 20344 33 93.9 28 .......................A......A.. TGGTCGGCAGTACGTTGGTCGGGGCGAT 20405 33 84.8 29 ...T................A........G.CC GGCCGGGCGCGTGGCGCCCTTCCCTGAAC 20467 33 90.9 28 .............................G.CG AGGTGACGGTGGAGGTCGAGGAGAAAGC 20528 33 84.8 28 .................A.......G..T.G.C GCCGCATGTCGATGACAAGGTCAGCCTC 20589 33 90.9 28 ...T.........................C..G ACGGGGTGAAGCCGTGAGCGACTTCGTC 20650 33 78.8 28 ...............A..A.....CC...G.CC TCCCCGAGGCAGGGACGGGGGCCAAGCC 20711 33 87.9 28 ...T...........A.............G..C AGACCGTCGTGATGGCCTCCAGGACACC 20772 33 81.8 25 ...TC..T................C....C..T CCGCCGCAGGCTCGCCGAGGACCGG 20830 33 66.7 28 C.GG...T.C...C..........C....CTCG CCAGCCCGCACACTGACGACCTCGGCGC 20891 32 84.8 28 ...T.-....A..............C.....C. AGCGGCACACGACAAACGAGGCCCTGTC 20951 33 93.9 28 ...................A..........G.. CCGAGACCGGCAAGGTCTTCGTGACGGA 21012 33 87.9 28 ...T.............C.............TC TGATGACATTCCTTATCGGAATGTGGGC 21073 33 87.9 28 .........A.....T...............CG AGCCGGAGGGCTGGCCTTGGAGTTGTTC 21134 33 87.9 28 ...T.........................CA.C TCACCAAGCTCGCAGGCGAGTAGCGTGC 21195 33 84.8 28 ...................A.........GTTG CGAAGGCCCGGAGCCTCGCCGGGCTGGC 21256 33 93.9 28 .............................A..G ACGGCACGATCAAGGAGGAGCGCGACTC 21317 33 90.9 25 ...A...T.......................C. CGAAGTAGATCGCGTTCGCCTCCAG AAC [21346] 21378 33 87.9 28 ...T.........................CA.T TCGAGCAGGTCGTGTTCCCTGGCATCGT 21439 33 87.9 28 ...T....................C....A..C CTACGCCGTCGTGCGGGCGTGGGGGTTT 21500 33 84.8 28 ................T.A..........GAC. CGGCAGGCATCTGGTTGACAAGCGTCGG 21561 33 81.8 28 .CG.......T..G........C.........C GGAGTTCCTCGTCGGTGCCGAAGTTCCG 21622 33 84.8 28 ..T..................A.......G.CG GCCGGGTGCACGAGGACCTGATCCGGCT 21683 33 84.8 28 C.................C..........G.AC GGCCGTCACGTGTGCGGAGTGCGAGGCG 21744 33 90.9 28 .....T.......................GT.. ACACGGCGGGCGCTTCCTCGGGCCCGAC 21805 33 100.0 28 ................................. TCCGCTCGACGCCCTTGCTGCTCTCCTC 21866 32 87.9 0 .................-...........AT.G | ========== ====== ====== ====== ================================= ======================================================================================== ================== 67 33 86.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGA # Left flank : GCATCTCGATGGCCGCGCTGGTGTGCTTCAAGGCCGGCGAACGCAGCCGTCTAATCTACCGTCCTCGCGTCCAGGGCCATCACCGAGGTGCCCACCGTGGCTTCACCTGGCAGGACTACCGTGATCTTCTCGTGCGGGCTCACCTCCAGCTCGGCGGCCCCGTCGTGGTCATCTGGGACAATCTGAATGTTCATCGCTGCAGTCGATTACGTGAGTACGCGGCAGAGCATGACTGGCTCACCATCGTCCAGCTGCCCAGCTACGCACCCGACCTCAATCCGGTCGAGGGCATCTGGTCGTTGCTCCGGCGCAGCACGACTGCCAACGTCGTCTTCCGCGACCGCGACCATCTTGTCCAGGCCGTCCGCAGCGGCCTGCGCTGCATCCAGCGACGCACCGACCTCATCGAGGGTTGCCTCACGGAAACCGGCCTCTCGCTCAATACGACAACTCAACGGAAAGGTCAGTAACAGGGACTGCCACATGATCGGCACGGTGAT # Right flank : GCGTCGATAGCCGTTCAGTACAGCCCCCACACACCCGCCCTCCGGGCCGCCCGGCACCGTCGAACGCTGGCCCAGGCTAGCGTCACCCAGAACCGGAGATAAGAACAGGCACTGAGTCTTAGGCACTCATCCAGGTCACTCTGCGGCCCGCCCAGAGAGCCTCTCACGGGGCAGCAGGCGATGCCTACGGCTGGTCGGACAACGGGGCTTGCATCTGCTGTCCCAGCCCATTTGTGTCCGCAGCACTAGACCCAGGCCCGGCTGCGATCGTCTGGACCAACATCGCGACGACCTCAGCCCGTTTCTCATCGGACAGGCCCGCGTCGGCCAACATCCGCTCTGCCGCCAGGTAGCGGGAGAACTCCAGCGGTTGATCAAAGTAGGCCTTGAGGTGGTCAGCAGCAGACTGCTGGGACTTCACGAATGTCTTGCTGATGAACCCGGCCAGCGCGGCGGAGACCGCCCCGAGGCCACCCGTCACGATCGCGCCGGTCGTGCTG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:-0.10, 8:1, 9:0.03, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [60-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //