Array 1 12360-11932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIX010000081.1 Phocaeicola coprocola strain An850 An850_NODE_81_length_12474_cov_25.932183_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 12359 47 100.0 29 ............................................... TAAGCATGTCTTATTCCTCCAGTAAATCT 12283 47 100.0 30 ............................................... AGTTAGGGAAATGTTCCTCTAAAGTTTCCT 12206 47 100.0 30 ............................................... CTGTTCTATTATTGTGTGCATTGTCAACTA 12129 47 100.0 29 ............................................... AAGTTTTTCCGGCAAATCGTTATAACCTA 12053 47 100.0 29 ............................................... AGTTGAAAGGACTCCCTGAAAGTATTATA 11977 46 78.7 0 ......C.............T.C.T.G....-.....T...T.T.G. | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 96.5 30 GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Left flank : CGAGTTTTAAGTTTAGCACGAAGGTATGCGAAAGAGACATGCTAGTCAATACGCCAATTTTGGAAGCTTACAAGCAAATCACAACTAATTAAAAGTATTTAGTTAAACATTCAT # Right flank : TTTATTTGAGAGAAAGTATTTGCTTTCATGAGTCTTATGTTGTGGCAATTAATCCGATGATGTATTTAAAGTAAAAGAACCAATAACAAGCTTATGTCCTTTTCTTCAGATAAATACATCTCGGTAGTCCACTATATTTCAAGGCTTGTTTTATATACGTATATCCTAATTTTTCCATGTTACTGCGTGAAAAAGAATTTTCCGGATGGACCGTACATAACAAATAACGGTATTGGGTTTTGCTCAGGGCTTCTTCTGCCTGACTTATAAGTAAACGTTGTAGTCCGTAACCTCGGAAGTTGGGATGCACTGCTACCGTATCCATGTGTGCTACACTGCACAACTCTGCTTCAGATAATCCAATGTCGTAACCTAGGTTCTCGGAATTTTTTCCGGGAAAGACGACAATGAATAATCCGGCAGTCTGTCCTGATACACTTTCAATGGCTTTCCATATAATGCCTGTGTGAGTAGACAATAGCGACTTTATATAATCTTTG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 419-66 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIX010000139.1 Phocaeicola coprocola strain An850 An850_NODE_139_length_573_cov_16.366000_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 418 47 100.0 30 ............................................... TTAATTGTTCATCTACTTTATGCGCTTCAG 341 47 100.0 30 ............................................... AAACTGGATTAACAGCGAGTGGATAGACGG 264 47 100.0 29 ............................................... TATAACAATATACCTCTTCATGATAAATC 188 47 100.0 29 ............................................... CTATGAACAAGAATATATAAAAGCATAAT 112 47 93.6 0 ..........................................GT..A | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 98.7 30 GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Left flank : CCGAATCGACTACGAATAGCACCGATTCGGAACTAATTCACAAAATTTGCAACGTGGTTTACCGAATGCTTACGGATTTTCTTGTAGGAAACATTTCTTTTTTATTTCTAATTTTAGATGTAATTTGTTGTATTATATAGGATTACATAAATTG # Right flank : ACTTCCAATTTTAGGGTATCCCCTTTTAGACGGGCGCCAGTCGGCACCCGTCTAAAAAAGAATCCA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //