Array 1 35280-36040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWI010000016.1 Lactiplantibacillus pentosus strain GPS1-6 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35280 29 96.6 32 ............................C GCCATAGCGTACTGTTTAGCATATTCTACTGA 35341 29 100.0 32 ............................. AAATGGCTAATACTTTAACGATAAATGACCAG 35402 29 100.0 32 ............................. GCACTCTTCAACCATTGCTTGAATATTCGGAG 35463 29 96.6 32 ............................C CCAGCTTGGCGCGTCCGTCGCAAATTCATTAA 35524 29 100.0 32 ............................. ACCACAGGTTCGACCATTCAGAACCAAGCAGG 35585 29 100.0 32 ............................. TGAGGCGCTTTTTCCGCAAATCATCAAGCGAA 35646 29 96.6 32 ............................C AACGGTACGCTTATCTATGGCAAGATGTTAGG 35707 29 100.0 32 ............................. TAGTTTGGGATACTGATTCATCAAATGATGAA 35768 29 100.0 32 ............................. GAAAATGATATTACATTGCGCAATCATGGCGA 35829 29 93.1 32 .........A..................C GAAGAGATTCGAAAGCAAAATGCGGCTCAGGC 35890 29 96.6 32 ............................C TATTCCTTGGGCGATTTTATCCGTGGAATTTA 35951 29 96.6 32 ...............A............. ATATGCATGTATGTGCCGAACAGTTTTGCAAA 36012 28 82.8 0 ............C..A......A.-..T. | C [36034] ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAACTTTCGCTACAAAGCTAGTAGCAGGAACACTATTGATAAACGCTTATACGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGTTCCCCCAAAAAACATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTTTTTAAATTCCGGATATAGTTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAACCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTAATGTAAATCTCAGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAGTCAGCATTGCTATCGCCTCTAATATATACTGGGATATTTCAGCATTCATACAGAGCAATGGACGACATCACTTCATCAATAGAACTATTTAACTTCTATGAGAACCAATGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTATGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGCCTTTCTACCTTACATAACGCTTGAGCTAACGCTAACGTCGCTCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGCTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAGTTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38658-39235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWI010000016.1 Lactiplantibacillus pentosus strain GPS1-6 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 38658 28 100.0 34 ............................ TATAAGCTTTCTTTGGTGGCTAAATCACTTGTCG 38720 28 100.0 33 ............................ CTGAGTCAGCTGGTCACGGATAGTTTTCAGGCC 38781 28 100.0 33 ............................ CAAGTGTCATTGCCTGGCAGCCTAGTGCGAACC 38842 28 100.0 33 ............................ TACATTACTTGATACATGTGCTGGTACGGGTGG 38903 28 100.0 33 ............................ CGATGCTGACACATTTTTTAGGGCTAACTTCGG 38964 28 100.0 33 ............................ TCTGCTTAGCGATGTGAACGATTTCGTTGTGTA 39025 28 100.0 33 ............................ CGACCACTTGGACGCCGGTTATATTGAAGCACT 39086 28 100.0 33 ............................ CGTTGTGTTCGCATGAGCCGTGTTACGTTTGAA 39147 28 96.4 33 .................A.......... TACTGGCATATTCCTGGTAGTTTACCTATCAAT 39208 28 78.6 0 ..A.......T....A..A.......TT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 97.5 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTGGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACAATTCATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGACATCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAACTTTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTCGATGGATTTTTGATAAATTATGACGACTAGTTTGTATCAAGTCAGTCTGATATGTCCAGTTTTGAAGTTTCCCCATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TCTTCCATGAAAAACACTAGTCCACTATGGTTGGTTGTTTCCCGTGTATACGGGAGACGGAAGTGCTTCACTTGGTTAACTTACAGGATTGCCACTGCTTTGCCATTTACAACATCCATGAAGATGACACTCGAATGGCAGATCATTACGATTTGAATGAATTGTTTATACGTCGTATTTTAGAAGGAGAACTACTCTTCCACAAGAACCAGTCTTATTTTGAGATTGACAATTCAAGCCTCGACAATCTTGTCAAAACATTGTTTCATCCGCCGTATCATTAATTTTAGAAAAGGGGTACTCTTATGCCTGATACCAACACCATACTTGCGCATACGATTATCGAACTGATATTGTATTTTGCTTTCATGTTTTTTGTTATTCGCTTCTTCGTCCGACGCCACCGCGCTAAGCATCCTAAGCGTCCTAAAGTCTCGCCATCACCGGAACAAAAAGCAGCGGCCAAAGCAGAACGGCAAGCACAAGCTAAAATTAGCAAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 228890-229772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAWI010000007.1 Lactiplantibacillus pentosus strain GPS1-6 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 228890 28 100.0 33 ............................ CGGTTTAACCAGCCATGCGATAATACGCATAAA 228951 28 100.0 33 ............................ TAATGCTTTTTCCTTACATCATATTCGACAGCT 229012 28 100.0 34 ............................ ATAAACTCATCATAAATCACTTCTTGCACGCGCG 229074 28 100.0 33 ............................ CCATAATTGGTGATTTACCATAATCGTGCTTCC 229135 28 100.0 33 ............................ CTGTAAAATTTGCTCTTCAGATCAAACACGAGC 229196 28 100.0 33 ............................ CTGTAAAATTTGCTCTTCAGATCAAACACGAGC 229257 28 100.0 33 ............................ AACACATGAAATACTTTCAAATCAATGCCGGCG 229318 28 96.4 33 ........................G... TATGACGATGTTCAAGACCCCACGCCCCTAATT 229379 28 100.0 33 ............................ TATCCATAACCATCGCAAACAGATCTGATTTCG 229440 28 100.0 33 ............................ TGCAAACAACGCTTTACAACTAGCATCCGCCGT 229501 28 100.0 33 ............................ TCATTCGAGTTCAAGATGGGGTTAATACCTATG 229562 28 100.0 33 ............................ CCAGCGATATTGTTGTTCCGTGAAAACCGGTTT 229623 28 100.0 33 ............................ CAGAATAATCCCATACACGCCAGCCAGTCCGAC 229684 28 100.0 33 ............................ TGCCATCATGGGGACCACCGGCTAACAAAATTG 229745 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.3 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCGATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCATACTTTCATGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTGCAATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAACAAAGCCTAAAATAAGAAAAAGTAACATGCAAATCACTCCAAATTTCTTGCGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTCGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAGTACATCTTCAATCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCCGGTAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATACTCGCTCCAATATGCTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //