Array 1 259487-262455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015570.1 Pasteurella multocida strain USDA-ARS-USMARC-59962 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 259487 28 100.0 32 ............................ CACGAGGAAGGGAGAGCCATTAGTATCACTGA 259547 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 259607 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 259667 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 259727 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 259787 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 259847 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 259907 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 259967 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 260027 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 260087 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 260147 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 260207 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 260267 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 260327 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 260387 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 260447 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 260507 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 260567 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 260627 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 260688 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 260748 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 260808 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 260868 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 260928 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 260988 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 261048 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 261108 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 261168 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 261228 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 261289 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 261349 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 261409 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 261469 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 261529 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 261589 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 261649 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 261709 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 261769 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 261829 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 261889 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 261949 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 262009 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 262069 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 262129 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 262189 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 262249 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 262309 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 262369 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 262429 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1485951-1485023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015570.1 Pasteurella multocida strain USDA-ARS-USMARC-59962 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1485950 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 1485890 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 1485830 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1485770 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1485710 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 1485650 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 1485590 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 1485530 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 1485470 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 1485410 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 1485350 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1485290 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1485230 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1485170 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1485110 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1485050 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //