Array 1 2040159-2041469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015093.1 Pelagibaca abyssi strain JLT2014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2040159 29 100.0 32 ............................. CTCGGCCAACGCTCGATCAGGATCGCTTTGAG 2040220 29 100.0 32 ............................. CGCGACCACGCGAAGGTGCCACCAGAAACGCC 2040281 29 100.0 32 ............................. ACATCCACCCCGGTGAAGCGCGGGAAGCTCGC 2040342 29 100.0 32 ............................. GGGCGCTGGTTTGCCCCGTGATCGACCAGCGA 2040403 29 100.0 32 ............................. CGGTTACGTTTGGGCTGGTAGTTCGGCGGATC 2040464 29 100.0 32 ............................. GCTCACGGCCGCGACGACGCGCTCCTGCCCCT 2040525 29 100.0 32 ............................. TCGAACAGTCCAGGGGCTCGTCCGACGAATGG 2040586 29 100.0 32 ............................. ATCACGTTCCCCATGCAAACCAGCGGGGAGCC 2040647 29 100.0 32 ............................. GCGGCAGATGACTTTCGCCTTGTCGAAGCTCA 2040708 29 100.0 32 ............................. CACCACGTTGCTTGCGTCGAATATAAGGTTCA 2040769 29 100.0 32 ............................. TCGGATGTCGCAGGTTCGATCCCTGTCACTGG 2040830 29 100.0 32 ............................. CTGCACGTACCGGTCGAAGCGATCTGCGATTT 2040891 29 100.0 32 ............................. AGCCAATGCCTTATCGCCATTTCGCGTTACGC 2040952 29 100.0 32 ............................. GTCTTCCACCGCGATACGAAACACCTTGAGGA 2041013 29 100.0 33 ............................. CATTTTGCGCCGAACCGAATGCAGTTGCTCGAT 2041075 29 100.0 32 ............................. GCGCCTAGAGTTTTGAGCCGTGCGCTTTCGAT 2041136 29 100.0 32 ............................. GCACGAAGCAGGCCGGCCGCGGCCTCGTGCGC 2041197 29 100.0 32 ............................. CGTTCACGGGACATCGTGAAACCTCTTCAAAA 2041258 29 100.0 32 ............................. GTCCGGGTTGCGCTCGATGACCTCGAGCAATT 2041319 29 100.0 32 ............................. GGCCTGAGACCACGATGGCCGCAGACGCGAAT 2041380 29 96.6 32 ............................T TGCCCAGCCAGCATTTGCCATTCACATTCGGC 2041441 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 CCGTTCCCCGCTCGCGCGGGGATCAACCG # Left flank : GCTCCGACCAAGCAGCGCACGGCCGTGGCGGCAATGCTGAAGACGATCTTCGCCCAGGAAAACAAGGCGGATGCCGAAGCCCAGTGGGAGGTCGTGGCTGACGCGCTGCGCGAGAAGCAGGCGCGGCTCGGCGCCCTCATGGACGCCTCGCGCGACGACGTCCTCGCCTACATGGATTTTCCACGTGAGCATTGGGCCCAGATCGCGTCGACGAACCCACTGGAGCGGGTGAACCGGGAGATCAAGCGCAGGTCTGACGTCATCGGCATCTTCCCGAACGACGAGGCCATCGTCCGTCTCGTCGGCGCGCTGATGCTCGAGACCAATGACGAATGGACGGTTGCGCGGAGATACATGTCGCTTGAAAGCCTGGCGCGTGTCACCGACACTACAACCGTCAGGCTGTCCGCCGTGGCGACCTGATCAGCCTTGAACCTCTCCGAAGGTCGGCGCTCTTACACCATCTCTCGGGGCACTACCTAGCCCATATCTTCGTCATA # Right flank : GGATTCGCACGCCGCCGCCGGTAGTGCCCCGAGAGATGGTGTAAGAGCGCCGACCTTCGGAGAGGTTCAAGGCTGATCAGGTCGCCACGGCGGACAGCCTGACGGTTGTAGTGTCGGTGACACGCGCCAGGCTTTCAAGCGACATGTATCTCCGCGCAACCGTCCATTCGTCATTGGTCTCGAGCATCAGCGCGCCGACGAGACGGACGATGGCCTCGTCGTTCGGGAAGATGCCGATGACGTCAGACCTGCGCTTGATCTCCCGGTTCACCCGCTCCAGTGGGTTCGTCGACGCGATCTGGGCCCAATGCTCACGTGGAAAATCCATGTAGGCGAGGACGTCGTCGCGCGAGGCGTCCATGAGGGCGCCGAGCCGCGCCTGCTTCTCGCGCAGCGCGTCAGCCACGACCTCCCACTGGGCTTCGGCATCCGCCTTGTTTTCCTGGGCGAAGATCGTCTTCAGCATTGCCGCCACGGCCGTGCGCTGCTTGGTCGGAGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCTCGCGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2042909-2044340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015093.1 Pelagibaca abyssi strain JLT2014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2042909 29 100.0 32 ............................. ATGTGACCATTGCCCCGGAATACGTTGAGGGG 2042970 29 100.0 32 ............................. CGATGATCGACGCCAAGAATTTTCGCGCCCAA 2043031 29 100.0 32 ............................. GGCGCAGATGTCGGTGACGGCACGAGCGGACC 2043092 29 100.0 32 ............................. GGCGAGCTGATGGATCTTCTTCAGCCGCTGGC 2043153 29 100.0 32 ............................. GCGCAGCAAGCCATAGCAGTCAGCGCCACTGC 2043214 29 100.0 32 ............................. CGACTCGTGAACAGCGACGACCCGAGTGGCGA 2043275 29 100.0 32 ............................. ATCACCAGTGGGCAGGAGCAGGCCGCTCGGGT 2043336 29 100.0 32 ............................. CGCTGAACCGCGACCTGGCCGCCGCATCTGGC 2043397 29 100.0 32 ............................. TCGGCTGGCGTCATGGGCGAGGGACAGGAAAA 2043458 29 100.0 32 ............................. GCCCGAGCCGCCGGCGAGCTGGTGGAGATCGT 2043519 29 100.0 32 ............................. CTGGCCGGGCAGTTGAACGACCAGATCAACGG 2043580 29 100.0 32 ............................. GAATGATGATGGAACGGCAATACGAGATCGCC 2043641 29 100.0 32 ............................. GGACATTACCCATGGTTTCCCGGATGTGGTCG 2043702 29 100.0 32 ............................. GAAACCGGCATCATGAATTTCGCCGGAGACCA 2043763 29 100.0 32 ............................. CGCCGCACCTTGCCGCCGCTGGCCGTTCCGAA 2043824 29 100.0 32 ............................. AGACCGGACATCGTCCCGACTGGGACGTCAAG 2043885 29 100.0 32 ............................. CTGTCGTTGCCATCAACCGTGTGCCGCAGCCG 2043946 29 100.0 32 ............................. ATGGACGGGCAGGGCGGTGACCAGTCGATGAT 2044007 29 100.0 32 ............................. GAACGTCAGGGGCACCCGATCTCTCTGGAGGC 2044068 29 100.0 32 ............................. CTGGATGATTTGCCCACCCTAAACGGCCTCGA 2044129 29 96.6 32 T............................ GCTCGGGGCGGATCATATCGGTGCGAGACAAT 2044190 29 100.0 32 ............................. AGCACCAACTTCTCATACGGGTCGAGATCATC 2044251 29 100.0 32 ............................. GAAAAGTTCCCCGACTGGGATCCGACGAATGA 2044312 29 86.2 0 ........................CG.TT | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 CCGTTCCCCGCTCGCGCGGGGATCAACCG # Left flank : CGAGACCCCGTGGACGTAAGCCTCCTGGATCACCGCCACCAGCGCCTTCTCAGCAGTCCGTCGCGGCTCCAGGAAGCTGGGCAGGTAGCTCCCCTTTCTCAGCCGCGGGATTTCCAGCGCGATCCGACCGGCACGAGTGTCCCAGTCGCGGTCCCGGTAACCGTTTCGCTGAACCTCCCGCAGGGGAGAGCGAGCGCCCTTCGCGGCACCGGTTCGCGCCTCGACCTCCACTTCCATGATCCGCTCGGCCGCGAAGGCCAGCATCTCGCGCACGAGATCGCCATCGGCCTGCTTCGCAACCAGCTCAATCAGCGTCATTCTGTCATCGGTCATCGTCATCTCCGTTCTTGGTTCAAGGTCTCGCAACCCGAACCTTCTCGAAGATCGGCGGTGGCCGCCAGCGTCACACCCGGCCGCGCGCTGCGCTACGCTGGGGGCTCCGCGCGCGGCCTCCTACACCAAGCGTTGGGACACTACCCCGCCGCCGGGGGTGACCTCGA # Right flank : TTGAGGCGAGGCGAAGGCTAACAAATTGGCTGCTGCAACAGCACGGCTCCCACTGGCGTCCCATGGGCCTTCGCAGCCGCAGTGAGATCGCGCATTCGCAGCTAACGACCGCTTGGTACCGCACGGTCGACGTTCACCCAATAAAAGTGCTGGCGATGGCCGAACGGCCGGTCTGGTGAGGCTGCACCGCAGCAAAGGCGTCTTTGGTGAACGGCTGGAGTGGGCCGAGAGATTCAGGTGGTAGGGAGGGATCGCGTGGCTTGCCCGCTTCAGCAGTCTCGACGCGGCATCTGGAGGTGACGGTCAAATAGTCAGTTGCTTAAGGACAAAGTCGGCGCGTGATTCGATGTCGGTACGCGGCAGCTCAGTTATCTCGTATTCGAGTGCGGAGTAGGCCTCATACATGGCTTCACAGGTCGCTTCGGCTTCAGCTTGGGTCTGCCTCCGCTCGGTGTCTTGTGTGAAGATCTCGTCCCAGTAGGGCGCCAGAAAGACGCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCTCGCGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //