Array 1 2171351-2170120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072453.1 Providencia sp. R33 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2171350 28 100.0 32 ............................ TCAAATAAAAAAGGGAGCCTAAGCTCCCAAAT 2171290 28 100.0 32 ............................ ATCCCATTGAGCCAGTTTGAGCGCCACTAAAG 2171230 28 100.0 33 ............................ CTCTAAAGAACATGTTCGATATGCTTGAGAAAT 2171169 28 100.0 32 ............................ CCTACAGATTACAATCACTCTGTAGCAGGAGG 2171109 28 100.0 33 ............................ GGTGAAAACAGAAAGCAGCCACAGCGTGATTTA 2171048 28 100.0 32 ............................ CAGAACAAGTCACGCAACCTACTGATATTAAA 2170988 28 100.0 32 ............................ TTTATAATATTTTGACTCCCCAGCACCCTGAG 2170928 28 100.0 32 ............................ CACACACAAGCGAATACATGAAACTCAAGGAG 2170868 28 100.0 32 ............................ TTATTATCAATTTGCGCACTATTCATGCCTAG 2170808 28 100.0 33 ............................ AAAACAGAGCTATTTCTTTGTCACTTAAATACC 2170747 28 100.0 32 ............................ TCGCCGACTTTTTACACGTTGAGAGATGGTTT 2170687 28 100.0 32 ............................ TTTAACATTGCATCTGCCATGCGATAGTAGAA 2170627 28 100.0 32 ............................ AGCCATCTGCCCGTTGTAAGAGGTCACGGACA 2170567 28 100.0 32 ............................ TGTCTGTATATGTGTTCTTTCCAGAGTTGATG 2170507 28 100.0 32 ............................ TATCTGCATTTTGTTGCTCCTGAATTAACATT 2170447 28 96.4 32 .............T.............. TAGCGGCGCGAGGTGCAATTCAACTCCCCCCA 2170387 28 92.9 32 ...........T.T.............. TGTATTAGCATGAGTAATACATATCCGATTAT 2170327 28 96.4 32 ...........T................ GTTGCATATGACCGTGATAGAGAGAAACAGAG 2170267 28 96.4 32 ...........T................ CCCCTAGAAAGTTTTCCCCTCTTCCCCAAAAT 2170207 28 100.0 32 ............................ TTTCGGGTCATCTTCTTTCACTTTGAATCGTG 2170147 28 82.1 0 ..........A..T.......C...T.C | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCAAGTCAATTCAACAGGCTCCCGCGCAATCTGTTTTTGTGAGTTATATTCGGCGCCATGTGAAAGGGAAAAGCCGAATAGAGACGGATATGCAGAAAAAAGCGCAGCTATGGTCGGAAAAAACGGGGCAATCGTTGGAGATCAGTTTAGCGGTGTTATCCAAAAGCAAGCCTAAAGCCAATAACCGCCTACCGTTTATTTGGGTTGAAAGCCTACATGCGAAAAATACAGAGGGAAGTGGGCGACCTTTTCCATTATTTATTGAACGGGTGATGGCGATGAGTGAGCAAAAAGGGCCTTTTAATTGTTATGGCCTAAGCCAAGTTGCGAATGGCTCAGATTTGATTGCGACGGTTCCGCATTTTTAACCTTTGTTTTTGGCTCTTTAAAAATAAGCAGTAAAATCAACAAGCTATATAATTGATGAAATAAAAGGGTATTTTTTAATAAATACCCTTAACTAATTGTTATAGCTTGTTTTTTGTTTTGAGATTTATA # Right flank : TACGGCTTAGAAGGCCGTTGCTCATAATAAAATCTATTTATCCTATCCTATTAGCTGATCAATTATTAACTTTGCCTATCAATAATTGATATTTATTTAAGCGAATTTCTTGATTAGGTTAGTGATGTGTTTAACACGAAATACATCTTGTCACTATCTCGTAATAGCTTAGAAATGAAACAAGATGCGGGTATTTATCGCTGCCATGCAGGCAGCTTCAACTACAGCAACAACCCTGAAACAAGAAACGGGTTTTAACAGTTTAATAAGGGGGAATTATATGGAAATCATCATCAATTTTTCTTGGTTTACGTTAATTATCAGGTTCAAAAAAGGGTTCTGATAATGTGTGAATAGGTCATTAACTAAATACCAATACTCAAACAAACAAATTAAACATTAGTGAAAGTTGCTCGAACGCTTGGTGGATAAGGCGTTCGGTATAGCGGGGGAGGATGGAGATAATTAACCCTAACATGCTGATACCGATGGTCAGGGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2180521-2180010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072453.1 Providencia sp. R33 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2180520 28 100.0 33 ............................ CAATTTTTGCATTTTTTAGTGCTTCAGAACTCC 2180459 28 100.0 32 ............................ AACAATTCCCTGTGCCGCTTGGCATGTAGAAA 2180399 28 100.0 32 ............................ ATTTACGATAAAGGTAATAATTTTATTAAACT 2180339 28 100.0 32 ............................ CACCTTATTGCGGAGTTGCTCATCCGGATATT 2180279 28 100.0 32 ............................ AAATGGGCGCAGGTCATCAGGTTTATGGTCTT 2180219 28 96.4 33 ...C........................ AGTAAAACAAGGTTACGGAGAGCACGAAAAAGT 2180158 28 96.4 32 ...C........................ TGTTGAAACGCGCAATGGTCCATTCGAAGATA 2180098 28 96.4 32 ...C........................ GACTCATAATCGGTAGGTTGCTGGTTCAAGTC 2180038 28 78.6 0 ...C.......T...........TT.TC | C [2180012] ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.4 32 GTTTACTGCCACATAGGCAGCTTAGAAA # Left flank : AAACCGCGGCATTAAAGCGGCGCTCGACCAAATTTCCAATATTGAAGCGAAACAAGGTTTACAGTTGCAAGAAATTGATAAATTGGATTTCTTAGCAGACACGCGCTCTATTCAAAATGCTGCACGTAAAAGTGAATTGCTTGAGACCAATTGGACAGGTACCACAACGGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGCATTTTTAAAGATTTAAATAGCATGTCGTTATTCGGTAGCCGTTAATCATCTTAATATTGAGTTCTACTCAACCGCGCTTTGCCGTCATTGGAGCGCGGTTTTTTTTTTTGGGGCTTTCCTCAACTAATGTGAAAACTAAGTTGTGCTATCCTAAATTTACCCTTTATTTCTTTCTCTTTAAAAATGCGACTTAAAACAACACGTTATGAATTCGATGCAAAAAGAAGGTATTTCTCTGTTTTTATCGATAAGGGTTTGTTGTGATTCACTTTAGTTCTGATATTTTATC # Right flank : CAATAATTCTTACCTCTAAAAAGTTATTCTTTCCGTGACTTTTGCCAAATGCCTCACAAATTTTACTTTAGTGCTGGTTTTGACTTGTTTCGTGAGGGGAAGTGGATTCTAATTAGACTTAAAACATTCAGTAAATTTATCAATTTAAAAGGATATTAAATCGTAATGGATGGTTTTTTGCCTTCAGATCTCAAAACTATTTTGCATTCCAAACGCGCCAATATGTACTACCTAGAATACTGCCGCGTGATGCAAAAAGATGGCAGGGTGCTGTATTTCACTGAAGCGAAAAATGAAAACCTCTACTTTAATATTCCTATTGCAAATACCACCGTTATTTTACTGGGAACGGGAACCTCGATCACCCAAGCTGCGATGCGAATGTTATCTCAAGCAGGGGTCTTAGTTGGTTTTTGTGGTGGCGGTGGCACGCCGTTATATATGTCCACCGAAGTGGAGTGGATGACGCCACAAGGTGAATATCGACCGACAGAATACCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //