Array 1 42196-41904 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXTM01000001.1 Balnearium lithotrophicum strain DSM 16304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 42195 29 100.0 40 ............................. CCCTTTATCAAAGCATACCCCCTACGTGCATCGTCAAGTT 42126 29 100.0 35 ............................. TTATATTCGGGAAGGGAAAGGAGGAGCTTGGAGAA 42062 29 100.0 36 ............................. TTGAGTTCGGGCTGGGGCTTTCTCTGTTCCACATAA 41997 29 100.0 36 ............................. CGATTTAAGGCATACATTTGCCTCTCTAATGGTTAT 41932 29 86.2 0 .................C.....GG...T | ========== ====== ====== ====== ============================= ======================================== ================== 5 29 97.2 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : AATTAAACATCTATCAGGAGATAAAGTTTATACTCCTTTGAAGGCGTGGTGGTAAATGTTCATCATTGTAACCTATGATGTAGATGTAAAAAGGATTGATAAGGTAAGAAAAACACTAAGAAAATATTTAAACTGGGTTCAAAACTCTGTGTTTGAGGGAGAAATAAGCATATCTAACTTGGCCAAATGTAAAGCTGAATTAGAAAAAATCATAGAGGAAAATGACTCCATTTATTTTTACGAACTTAAGAGCCCTTATGCAGTAACAAAAACTGTCATAGGCGAAGATAAAAATGTAACAGATAATTTTCTATAGTTGCAGCAAATCGAATTTTATATGCAGTAGCAGAAAGGCTTTACAAGACAGTCAATTAAGTCGAATTTTTAGAAAATTCTAAAATTGCTACTGCCGATTTGCTGTAAAAAGTTACCTCTTCAGTATATGATATAATGTAACAAGTAGTTGTCGCTCTTTGAATTCAGAGAATATGGATTTCAAG # Right flank : TTATCGTAGAGACTCCTTCCTTATGATGGAATGGTTTGCTTAAGATAGGTCATCTTTCGAATCTTCAAATTCCTTATACTCTTCGGAGTTTAGAATAGAATCTATGAATTTATCAATTTCCCCCCTTTCAAGGAGAGCTCCCGTCAACAACCTTCCTGTGTATTCATCGTTCTTTATTTCCCAGAACATGAAGAAATCGGGATACATTTCCTTCAATTTCTTGTAGGCCACTCCATACTTGCTGGGTTTTTCTGGGTTCTGTTCAAGAAAAAAGTGGTTGGGAGCTACCACAATTCGTAGCAGCTCCACACCAGTTTTGGTTACAACCTTCTGTAATCTTATTTCCTTACTTTCTTTTACTTTCATCTTTTGCATCCCTTACATAAGAAGTAGTCAGTCGCTGTTTTGGGAACATCCTCAGCCTTAACAGGACCCACTTTTTTGGGTTTCACCCCTTTTGGAGGAGGAGTTCTTAAAGCTTCCTTCCTTGCGTTAATTAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 73012-72318 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXTM01000002.1 Balnearium lithotrophicum strain DSM 16304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 73011 29 100.0 39 ............................. CTCAGAGGAGACCTTCACTAAGGCAAGGCACGTTCTAAA 72943 29 100.0 36 ............................. ACAAGCATTCAAAGCTTTTTGAGTCAACTCATTCAA 72878 29 100.0 36 ............................. CGTTAAATGAGCTCCGAAAGTGGCCGCCCATCTGTT 72813 29 100.0 37 ............................. GTTTTTGTTTTTCTTTCATAAACCGGAAGCTTTTTTC 72747 29 100.0 38 ............................. AATGCAAAACAGGAGGAAATAGAAGAGTTCTTTAACTA 72680 29 100.0 37 ............................. TAGCCTCCGGTAGCTCTATTGTGTCAATAAGTGATAA 72614 29 100.0 35 ............................. CCCATAAAGTTCCGTATCTAATTGCTCTTTCTAAG 72550 29 100.0 36 ............................. TGCTTGTTGTTGGGGCTTTTATAGCTGGTTTTCACG 72485 29 100.0 43 ............................. TAGTTTCTAAAACGACAGGTTCAACTGCATTACAAATTAGACA 72413 29 100.0 38 ............................. CCTCGGCGGGCGTTGCTGTGCCTCGTGGCTTGGCGTTT 72346 29 89.7 0 .......................GG...A | ========== ====== ====== ====== ============================= =========================================== ================== 11 29 99.1 38 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : ATCATCCTCAGCGGTAACTACGGCATATACCAGGTTTAAGGGAACTTTGTCGTAGGGGGTGTACAGCCTAAAGTGTTTTTGATAGTAAAAGCCAATAATTTTTCCATTGTTTCCGTAAACTTCTGAAGCAAAAGGGGGCATGAGTTTCATTTCGTAGGATTTTGAAGCGAGTGAAGGTTGAAAGAGTGTAATTACGGCAACAAGTGTTAAAAGAAACAAACGTAGCATTCATGCCTCCATTGGAAATTTACAAGGGAAAATTTATTGCATATTTATAGAATTTGAAGTTTTCTCTTCACTTAGCAGAACTTTAAATTTGCAGCGAATCGAATTTTCAATTAAATAACACAAAGACCTTGAGAAACAATTGATTGAACTAAATTTTCCGTGAAAGTGAAAATTGTAACTACCGATTTGCTGCAAAAAGGTACTTCTTCAGAACATGGTATAATTAACAAAGTAATTACAAATCTTTGACTTCAGAGAATATGGATTTCGAG # Right flank : GATTATTTCTTCATTAATTCTAAAACCTCCCTTATTCTCTTTCCCAAACTCCTTGCTGTTTTTAAGCCCCATTCATCAATCTCAAACTCATCATCAACCTGCTTTGCTACTGCTGCACACCCAAAGTGTGATGTAGGGTCGGAGTCTGAGACAACAATCATTCCATGAATTAAGGCCCATGAGAGAATTACCTGAAGTGTATGCTCCTGTCCACCGTGTTTTGTTGCTCCTACTGCAATTGCTCCACAAACTTTGTCCTTTAAATCCCAGTTTACCCTCAAAGTTCTTGAGCGGTCAAAGAGGGTTTTGAGCATTCCAGTTACGGAGCCAAAGTAAACAGGAGAGCCAACAATTATTGCGTCCGCTTCCTTCATCTTTTGAGCTATTTCCTCGTAACCGTCCTTAACTATACAAATTCCTCCGTTTCTTTTACAGGCATTACAAATTTTGCAGTATTCAAGAACGTAATCGGATAGAGAAATTATTTCTGTTTCAAATCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 41972-42648 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXTM01000007.1 Balnearium lithotrophicum strain DSM 16304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 41972 29 100.0 36 ............................. AATTTTTAGGCTTTAATTCCATTCTTCCCTGCCTTA 42037 29 100.0 37 ............................. ATCAGAAAAGCAACAAGAGCAAAAAACATTACAACAG 42103 29 100.0 35 ............................. TTTGAAGTTGTTTTGGAAGTTCTTGATGAAAGCTA 42167 29 100.0 36 ............................. GTTTCTCCAGTCCTTGATTGCACCCATTATGTTCAG 42232 29 100.0 36 ............................. TTCAGAAGATAGAAAAGGAAGGGCAGGAGTACAGAA 42297 29 100.0 36 ............................. TCGTGAGGTTTTCAGGGTGAAGGTTTTGGAAAAGGT 42362 29 100.0 34 ............................. ACGCTTGGGTCTGCAGGAATTGGCGTTAGTGATA 42425 29 100.0 36 ............................. TTGAGAAAGTTCTTTGAGTATTTCATCCTTGACCTG 42490 29 100.0 35 ............................. CCAGATACTTCAGTAACTGTTACGATTGATGGAAC 42554 29 100.0 36 ............................. TGCTAAGGAAGATTTAGGCTACGCGAGGGGCTTTTT 42619 29 82.8 0 .......C............A..GA...T | C [42641] ========== ====== ====== ====== ============================= ===================================== ================== 11 29 98.4 36 GTTTTATTTGAACGTAGTGGGATATAAAG # Left flank : TAATTATAGAACGAAGAGATAAAATGGTTGAGAAAACGGGAGTAACGGACAGGGAAAGGGTTTTTGAGGAGCTCCAAAAGGAAGGATACGAAAATCTGTACGTTTGGAGTGGCCCTCCGGGAATCTATTATAACTGGCACATTCACCCCTTTGATGAGGTAAGGTGGATTCTTGAAGGAGAAATAACTATCGGGACAAGAGAAGAGGTATTTCACTTAAAGCCGGGAGATAAACTGAGAGTTCCTGCAGGAACGGAACATTGGGCAGAAGTAGGTGATAAAGGAGTTACCTACGTTTGCGGAACAAAAAGATAGCTGCAGCGAATCGAAATTTTAATGCAAATACTTGAAAACCTTGTAAGACAATTGATTAAGTTGATTTTTTTTGGAGATTTCAAAATTGTAACTGCCAGTTTGCTGCAAAAAACTACCTCTTCAGAACATGTTATAATTGATAAAGTAATTGAAATTCTTTGACTTTGAAGAATATGGATTTTGAGG # Right flank : TTCTTTAAGTCATTCTATTCCAAGTTCCTTTCAAGACAACTCCTTTTCCTGTAAATAGGGACAGGGATATTTAAAATTGAAGGATGTTCAAGAATTTATTTTCAGAATTAAACTGCCCTCCTTGAGGAGGGCAGGACTTTAATTAGTTATTCAGGCTTTTTCTTGTTTATTTTTACGGGCTTAATGTACTTGTCAACTACATCTTTTGTATTAAAGACGTTAAGCTGCTCAAATAGGAAGTTAAACTTGTTCTTCAAAGCCTCCATCATTGGAGCTTTTACACTCTCTGGCAAGTCCCAAAACTCTTTCTTAAACTTACCAAAAGCCTTTTTCCTTGTTTTATAGATAAACTGCTGTTCTGTCCATCCTTCCTTCCACTCGTTTTTTAGCTCTGTTTTCAACCAGTTGTAGATTTCTTCCTTAAAGTCCTCCGGTAAATAATCGTAGATTATGTTTTGAAAACCGGTTGCAAGGTGAATTTCAGCAGTTTTCACCTCTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 11861-11621 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXTM01000021.1 Balnearium lithotrophicum strain DSM 16304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 11860 30 100.0 37 .............................. ACGACTTAATTTCTCAATAATTCTCCTTTGCCTTTCT 11793 30 100.0 40 .............................. ACGACAAATCTCTATATACACTTGGACTTTCAGTTCTTAA 11723 30 90.0 42 .............A.......GA....... GCAACAATTTCCTCAGCTGAAAATCAATTCCTTAGATAAAAA 11651 30 83.3 0 .............A....TA......T..G | A [11628] ========== ====== ====== ====== ============================== ========================================== ================== 4 30 93.3 40 GTTGAAATGCCCTGAAAAGTGAGAGGGATT # Left flank : AAGATTGGAAAACGATGATATGGTGCTATGAGTTTACCTAAAAGAGTTAAGAGATTTGTCGTGGTTTACGATATCTGTATGGTTGATAATTCTTACTCGGAAATAAGGAGCTCCGCAAAGCGGAGAGCTCAGATTATGAGGATTCTCTACGATTACGGAGTAAGAACACAGCTCAGCGTTTTTGAAGTAGAGCTTAAAGGAAAGGAGTATTTTGAAGTTTCAAAAAGGTTAGAGGAAGTCATAAGGAAAGAAACTGATAGGGTTTTCATTTACCCCTTAGATGAAAGGAGCTCCAAAAGTATTGTTAGAATAGGACAAGAGGCTGAAATATTAGGGGATTTGTTTATTTGATAAAATTACTTTAGATTCTTTGAAAACTGAATAGGAAAAAGGGCAAAAACCTGTATAGCTGAAATTATTGCTTTTCAGTGTTTATTAGATTTTTATGAAAAACTTTGTATTTTGGGGCCCTTAGAAATCAATGGCTAAAATTTTGAACT # Right flank : ACTTATGAAATTGAAAGGGAAAATCTTATGTTCCTAACTTTTCTATTTCCCTTTTAAGTTCAAGTATTTTTTCACGGAGCTCCTCAGGATACTCCTCCAAATCCCTCTTCCTAAGTCCCATAGGAACCCAAACAAGGGCGTCCAACCTTATAGGAGGAATGTTCAACTTCGAAGAGAGCTCCCTCCAAGTTTTCAATTCTGGAAATATCTTCTTTAATCGTGAATCCAGAGGAATTTCTATTTCCTCTAAATTTTTAGGCTCCTTATCGAAAACAATTTTATAGCCGTACATAAACATCTTTGCAGAGAAAACTACCGTTTTCGAGTCCTTCTTCTGTTTCAGACACTTAGAGAGCTCCTCAACTAAAATTGATAAATTCCCTCCCAAGTCCTTTAAGGAATATTTTTCAAAAATACTATTTACACACTCCTTCGCCCTTTTAAATCTCTTCAATTTAGCCTGTAGAAATCTCCTGTTGAATTTCGACAGAAACTCGGGA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCTGAAAAGTGAGAGGGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 16119-15856 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXTM01000021.1 Balnearium lithotrophicum strain DSM 16304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 16118 35 97.1 40 ......................G............ TTTTTTAACGAAAATTTTTTACAATCATCTTTAAACTTCT 16043 35 100.0 38 ................................... CTCTGTTTTGCAAGTTCACAGTAATCAGGATTGAGTTC 15970 35 100.0 43 ................................... CGTGTTTGCACCTGCCCCAATTTCTGAATCCTCGGCAGGTACA 15892 35 82.9 0 ...........T............T..T.C.G..A | T,G [15867,15869] ========== ====== ====== ====== =================================== =========================================== ================== 4 35 95.0 41 GTTGAAATGCCCTAAAAAGTGGAAGGGATTGCGAC # Left flank : ATTTCTCCCTTCTTGGGATTGCTTGGAGCTTTTGTAGGTGGAAGTGAAACCGCCTCAAACGTTCTCTTTGCAAAGATTCAGTACGGGGCCGTAGCTTCAACAGTAGGGGCTTCGGTATTTATGGCCGTTTACGGAGCTCATGCGGTGGCCGGAGGAATTGCAAGTGCCATAACCCCCTCAAAAATTACAAATGCAGCTGCACTTGTGGGAGTTAAAGGAAAGGAGGAGGGGAAGCTCCTAAAAACCTTAATTTTTCCCGTTTTAGCTTTAACACTCTTTGTTGGAATAATGCTTCAGATAATTGTTATGGTTTCAAAGTAACAGAAGGCAGGCTTTGTCCTGCCTTTTTATGTTAAAATTGAAAAAGTTCCTTGAAAATTGAATAAGAAAAGAGGGCAAAGCTGTATAGCTGAAAATGTTGGTTTTTAATATTTATTAGACTTTTATGAAAAACTCTGTATTTTAGAGTCCTTGAAAATCAATGGCTTAATTTTTGAACA # Right flank : ATTGATGGAAATCTTTGTTGAAGGGAACAGCTTGTGGAAAAATAAGGATAAGATTTTGGAGTAAAGGAGAATGTTTGAAACTTCAACTTTAGTCTCTCCGGTTTCAACGCAGGTTTTTCCGGTTGTTGTTACAGTCCTAACGTTAAAACCAGCTAAAGTTGTTCTTCTATCAACTCCTCAAATGAAAATGTACTCTGAGTTCATCAGGAGAGCTCTTAATCTCCACGGAATAGAAGTTCAAGAAAGGGAAATAAATCCATACTCATTCAGTTCAATAAAAGAAGTAGTTAAGGATATTCAAAATCCTATTTTTCTTTTAAACTGTGGAACAAAATTTACGGCAATTAGTTTGTACAGAATTTCTAATGGGAAAAATATGTTTTACTATTTACCAACGGGAGAAATTGTTGATTTTAACGGTAATAAAATAGCAAGAGTTTCTGAAAATTTAATTGATGTAGAAACTCACGCTAAAATTTATGGCTTTGAAATTGTAGAAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATGCCCTAAAAAGTGGAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //