Array 1 348066-346776 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYJR01000003.1 Streptococcus agalactiae strain GNUCH_SAga_22 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 348065 36 100.0 30 .................................... TTCGCTTTCTGTTGAAAATCCTCTATTGAA 347999 36 100.0 30 .................................... TTGACTATTTCAAACTTTATACAATTGTCT 347933 36 100.0 30 .................................... TATTTGAAGCCGTTAAATTTCTCAACTCTA 347867 36 100.0 30 .................................... TATTGAAGATTCTGTAAAGACAAAAACCCT 347801 36 100.0 30 .................................... TGAGCATAAAGTATATTGTCTTACGACATT 347735 36 100.0 30 .................................... AACTTTCTTACAAAAGGTTCTAGTTTTCTT 347669 36 100.0 30 .................................... GCTGGAGATTTTACAAGCAGTTTGAATTTC 347603 36 100.0 30 .................................... ATCACACCAGTCGTTATGATGGATGACTAT 347537 36 100.0 30 .................................... TGTCAACAGTACGTGAGACGAGTGTGTAGG 347471 36 97.2 30 ..............T..................... TGAAGTTGATGGATATGTTGATTTAGAGCT 347405 36 97.2 30 ..............T..................... TAATCATTTTATGAGAGATACCGCCTCAAG 347339 36 97.2 30 ..............T..................... GCTGGAGTTTTTTGTTGTCAAAATTTTTTG 347273 36 97.2 30 ..............T..................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 347207 36 97.2 30 ..............T..................... AAGACTAGAAATTTTAGGTTTTACACTGTC 347141 36 97.2 30 ..............T..................... ACGCTCTGAGGCAGATGAGGAACAGGCGCA 347075 36 97.2 30 ..............T..................... AATCACTTCTGCATAAATATCTTTTACTTC 347009 36 97.2 30 ..............T..................... AAACATCCGCAACGGGATAAATAAAGCTAG 346943 36 97.2 30 ..............T..................... AGTTTCTTGTGGGTTAGCTTGTCCACCGTA 346877 36 100.0 30 .................................... GAACATGAAAGATTTTAAAAAAGAACATTT 346811 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //