Array 1 2212333-2212566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOU010000001.1 Bartonella sp. M0192 NODE_1_length_2470864_cov_379.744930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2212333 36 88.9 30 ACA..C.............................. CCGAAGCCCGAACGTTGTTCGAGAGCTTCA 2212399 36 100.0 30 .................................... TGGCTGAAATCGCCTGTGAAATTTCGATCT 2212465 36 100.0 30 .................................... ACGCCACCAAAACACTAAGGGCGGGCGCGT 2212531 36 75.0 0 .A..T.....A...C...........G..G.G.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTCCTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCCTTGAACGAAAAAAGCAAACAGTCCACCGCACAACACTTATGAAACCGAAACATCTTCT # Right flank : CGTCCGGAGACTTCATACATGGCTACCGATCGTTGCTATTTGACCAAATTTTTTGACCTGAAACAACGCTGTTTGCGGCTTCAAGTTTTTCTGGTTTTAGTGCTCTGTTGTCTCGCGATAACGAAGTCGAGTGGAATTACTCTTAACATCTTCAAGTCTTTCAAGGCTCATGACTCGACCTCGTTCTCTACAGATCCCGTCTTCACCAGCACTCTCACCGCAACGCTACCCGATTATCCATTCTCAGTCATAATATTCCCGTTTCACGGGATAGGAGTTATTTTACGATTTTTCCGAAGTTTCAACGCTGATGTTGTGAGTTCTCCGCATATGAGCGCAATAAAAGAGTAAAAGCCCCATCCAATCCAATTTATATTTTATACTAGAGCGGTAATTAATTATGAATACAAAGACTAAGCTTGATGCTTTAACGTCTCTACGATTTTTTGCTTGCTTAATGATTATTTTCCATCATTGTTCGACAACATTTTTCGGAGAGA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2214211-2214775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOU010000001.1 Bartonella sp. M0192 NODE_1_length_2470864_cov_379.744930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2214211 36 94.4 30 .C.T................................ GCACTGGAGTGCCACTGGTTTTTCCCCGAT 2214277 36 97.2 30 ...................................T TCTTTTGCAACTTTGGGAGCAGTGTCAGCC 2214343 36 100.0 31 .................................... CATCGGCAACGAATGGTCCGCGCCCATCGCA 2214410 36 100.0 31 .................................... CGCAGCGATTAGCGAGCTTTCAGTCACAAAT 2214477 36 100.0 29 .................................... CGACCATTCAACGTTTAATGAACAAAGCT 2214542 36 100.0 30 .................................... TGACGGTAAGCTTGCGTTTATTAACGTCTT 2214608 36 100.0 30 .................................... ATTGAACGCTCGGAGTGCAAAAGGTTTCGT 2214674 36 100.0 30 .................................... CACTGGCGTTTGTCTGAACCGTTGGAGGCA 2214740 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTCTATTTCTGATACTTTTTATAGAATATATTTTGGACCTGTTGTATATAACTGGTCAACTTTGGTGGGCGGATTTGCCGTAATGGCTGCTGTAATCTATTTTTTTGCACAAGATGGGTTACTCTCTCGTTTAATTTCCAATAAGTTATTTGTTACATTAGGTGAAATAAGTTTTTCTATATATATGTGTCATCAGATAATACTGGTTTTTTTCAGTAGTCACAACGCCGTACTTTTTCGTTTTTCCGGCGGAATAAATTTTATATTATATTTTTTATATGTAATTCTTTTATCTTATGTAATATGGGTTTTTATAGAAACACCTATAAGAAAATTTATTGTAGGCGGGAAGATTGTTCATAGGTCAAATCTTATGAGCGAAACAATGAAAATTAATAGTGTTTTTAGCCTTTATTCTATTATCGCTTTGGTAGCGTTATTATCTATATCCTTCTACATACATTCGTTACTCAGGTAACTTGATGCGCTAATAGTTTCG # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTTGACGTGCCTTTCACGTTTTACTTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGAAGTGATCTTACCAACACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTACAAAGACCTCAAGCAATTTTGCCCCCCACGGTTTTCGATTTTTTAGGAAAGCTTTTGATAATATACCGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCAGACTTTAAGACAGCGTGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGTTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCACCACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 2217631-2218063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOU010000001.1 Bartonella sp. M0192 NODE_1_length_2470864_cov_379.744930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2217631 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATAATGGCTTTCTTGACCATG 2217697 36 75.0 29 C....A..C...T...G....A...G...A....T. TGGCCAAGTTCTGATCTCTGAAGTCGTTT T,G [2217720,2217722] 2217764 36 100.0 30 .................................... GCTTTCGTGCTTTCGCGTTCATAACGGTTC 2217830 36 100.0 29 .................................... TTGATTGTTCTGCAAATGACTCCCGTGTG 2217895 36 100.0 30 .................................... AAAAGATAATAATATCAAAGCATTTTACGT 2217961 36 100.0 31 .................................... AAAGAAAATATCGTGACGAAATTGTTAGATT 2218028 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 94.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTTAAAAAACCGGAAGGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGAAGCTCTCTAAAACAAATAATTTTTTGTCGGGCAAACAGCAATGAACTGGAAAAACTCTGATGCGTTTTTTTAAAATGCGCCTATGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAGCGGAATTTTCCAAAAAATCAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAACAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTGCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGAATGGCCGCGCTTGACCGCTTGTTCCAATCTGATAGACTATTAGCTGTTAGTTTATTGACACTTTTA # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 2218683-2218916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOU010000001.1 Bartonella sp. M0192 NODE_1_length_2470864_cov_379.744930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2218683 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 2218749 36 100.0 30 .................................... ATTTGATTTGGTCGAGCGTTCGCAAGCCTA 2218815 36 100.0 30 .................................... TCTTCCGGAGCGCCCATGAGTGCCGCATTA 2218881 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGGGATTGAAAAGTATAATCAACGAACAACCTAATTAAGGAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCCGTTTTTCATTAAAATAACACTGGTAATTTTCGATTTTTTTGACGTGTCTTTCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 2219533-2219965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOU010000001.1 Bartonella sp. M0192 NODE_1_length_2470864_cov_379.744930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2219533 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 2219599 36 100.0 30 .................................... TCAGTTGCAAATAGTGTCTTTGTAAAATTC 2219665 36 100.0 31 .................................... AAACAATACAACAAAATCGCACGGAAACTTA 2219732 36 97.2 30 ..............A..................... CGGCCGCGCCACTCAAATGGCTGTTGTTGC 2219798 36 100.0 30 .................................... AACTACGACGAACATGTCGCAGGTCTTTTT 2219864 36 100.0 30 .................................... TGAGCGAATTTCAATTGCTTGCAAAGCATA 2219930 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 98.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATATAACAGCATAAGAGGAACAAATCGACGAATAACATAATGAGGTAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCATTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //