Array 1 569-379 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFD01000387.1 Cylindrospermopsis raciborskii CS-506_D scaffold440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 568 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 494 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 414 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : CGTAATAAGGTTGTTTCCAACAACTTTATTGCGTGATTTTGTTTACCTCGACGTTTGCCATTCTTTCTGATTTTGGAAGACCCGCAGTTTGGACAATGCACAGTAGATTACCTCAATTCATACCTCTATTATGCAACGCCAAAAATCGCTTCTGTTTCGGGAATTTTCTTGATAGGCTTGGTTTTCAGAACTCATTTTAAGGAATTAAAAAAGGCAAAACTATTGAGTTATTAGAGGAAGTTGATTTTCCTGATAATGAAGAGGTATTAGTGGAAATTAGAGAGGTTAATGATTTTTGGTCAGCCTTGCAAGATTTTAAACAAAGAGTAGATTTGGCAAGTCTTGATGATGATACTTTTGATAATTTACGGGACAAGTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 134-2687 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFD01001030.1 Cylindrospermopsis raciborskii CS-506_D scaffold359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 134 36 100.0 43 .................................... AAACCATATACTATTGTTTATTAAAGTTAATTAACCTAAGCAG 213 36 100.0 33 .................................... CCGGGGGCTTTGTCAATGGAGTTGTACGACTAC 282 36 100.0 37 .................................... ACGGTGAGTCCCCGGACGTACGAACTCTTGTTAACTC 355 36 100.0 34 .................................... AACCATATATGGACTCCTCCCGGAGTTTCCTCTA 425 36 100.0 36 .................................... AGTAGAGGGGGGGTAGAAAGAAGGTTCTAAGTCAAG 497 36 100.0 39 .................................... AGGGGGAGCCGCGCGGCTACCTTCTTAGGATTTAAAAAT 572 36 100.0 39 .................................... TACTCTTGTGCGCCCAGTTGAGCGCATAGGATCGCGGCT 647 36 100.0 46 .................................... CTGCTGAAGTCTATTAGAGTAGATGGTTACAAAAGTAACTAATTAC 729 36 100.0 37 .................................... TACCCCCTCTATAATAACTGACACTATGTAGTATTCT 802 36 100.0 39 .................................... TTTAAAAGGAGCGACAGGGTCAAACTTTAAGGTAGTAGT 877 36 100.0 35 .................................... TATTCTTTGAAAAATTATTTAGTTGGTATCCTCTC 948 36 100.0 41 .................................... AAGACTTTTCGTTAAACAAGAGGTTTATTGTAGGTAAATAT 1025 36 100.0 37 .................................... AAACCCCATCTAAGCAGGGGCTTCGATGGGGTTTTAT 1098 36 100.0 37 .................................... CATAAACTTTTACCAGTAAACTAACTCAACTATAACT 1171 36 100.0 41 .................................... TACCCACATGGGGTAGAAGTGTACCATTACGGGGTCGTTTC 1248 36 100.0 35 .................................... TATTTTCTTAAACAGTTACTCGTTTAAACTTTTTA 1319 36 100.0 40 .................................... TAATTTTCTAATGTTTTTCCTTCGTTTTGCCCCTATAATT 1395 36 100.0 36 .................................... TAGACTCACTTCCCGCTCAGAGTTTGATACTTGGAT 1467 36 100.0 39 .................................... TTTTTCGGCAATCTCTCCAGACCCCCGCAGCATGTTTTT 1542 36 100.0 36 .................................... AGATGACTGGCCCAGAATTGTGCCGTACTAACTGGT 1614 36 100.0 41 .................................... CTGGATTAGCTTTACTGGATGTCAAGCAATTTGACCTAACA 1691 36 100.0 38 .................................... GCTTTGTGAGTGCTGCTACACAATCTAAAAAGAATGAC 1765 36 100.0 34 .................................... TAACAGGGTTTGAAGAAGAAATCATCCTTTACAG 1835 36 100.0 35 .................................... CAAATGGTAGAGTCTCTTAGGGAAAAAGGTAGGAG 1906 36 100.0 38 .................................... CAATAAATTAGTTCGGTTAAGCCTTCGGGCTTAAGAAG 1980 36 100.0 38 .................................... GTAACAGCTATTGAAGAGACTATGGGTCTTCAATATAT 2054 36 100.0 42 .................................... ACTAGATCCACTGGTTTTGATAAATAGTCGAAGATCGACTAT 2132 36 100.0 37 .................................... GAATTATAATGTAGAGGAGGGAAATTGGGGGTTAGAG 2205 36 100.0 37 .................................... CGTGGATAACTACATCCTCTTCAAGAGTTAAACCTTG 2278 36 100.0 39 .................................... TCTGAAGAGTTTTAAGCTCCAATATGTTTTTTTGTGTTT 2353 36 100.0 39 .................................... AGGCTAAAACAATAAATCCAAAAATCTCTTTCTTTAACA 2428 36 100.0 41 .................................... CACAGAGAAATCCTGTGGTATAATCACAGAACGTTCTACCA 2505 36 100.0 37 .................................... TGATACACTTGATAAACGCTGATTTGACTATAAAAGA 2578 36 100.0 38 .................................... AGATCTCAACTCTCTCCTTAGCGATAACGATCTCCCCT 2652 36 88.9 0 ..............................A..GCT | ========== ====== ====== ====== ==================================== ============================================== ================== 35 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGGG # Right flank : GTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATAGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 992-3856 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFD01000064.1 Cylindrospermopsis raciborskii CS-506_D scaffold500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 992 36 100.0 37 .................................... TTTTTAGCTGACTCTACGTCGTCAGCGTAGGGTATTC 1065 36 100.0 36 .................................... ACTAACCGAAACAGTGTTAGTGGCAAGAGAAATTAA 1137 36 100.0 41 .................................... TCTCTATCTGCCTCATGCCCAGGGCATGGAGGTCTTTTACA 1214 36 100.0 46 .................................... TCTATGCGTTCTTCAACCTGGTCTATGTATTCTTCTACTAGAGAAG 1296 36 100.0 38 .................................... TCGTTATAAGGGTCAAACTTACAGTGTCTTTCTAAAGA 1370 36 100.0 44 .................................... GCTAGAAAGCAAAGGTTGGGGTATTCTGCCTTTTAAATCTCTGA 1450 36 100.0 35 .................................... TTTCTAAAAACCCAAGTCTAATGCCTTTAGTACAA 1521 36 100.0 37 .................................... CACCCTGTTTCGATGGCATCGTTGTGTATAACTTCAA 1594 36 100.0 38 .................................... TTTTTGACGACCCGAAACTCGGAAGGTATCGCGACTGA 1668 36 100.0 35 .................................... CCAAAGGTACAGACTTAGCCACAGCCTCAGCTTCA 1739 36 100.0 42 .................................... TTACTTTTCTGAGGAAACCAACCTTCTCATAGGTGGCTCCCT 1817 36 100.0 37 .................................... TGACAAACCTTAATGGGACGGAGCCCTTTACTAATGT 1890 36 100.0 59 .................................... CCTTTNNNTCGNTNTTANNNCCCTTTATCGCTTTCCTATCCCTTCCGCTATTAGAGAAA 1985 36 100.0 35 .................................... ATTAATATTCTCCTAGATATGTTTTAATCGAACAA 2056 36 100.0 35 .................................... TCGGTCACGCCATAAAGAGTTTCCCAAAACTATGA 2127 36 100.0 41 .................................... GGGCTTTAAAAAAAAGTTATTTATCCATAGATTATAAATAA 2204 36 100.0 35 .................................... AATAACAAAACTACCAAAGGAATTAGTAGTAGAGA 2275 36 100.0 37 .................................... GTAGAGAATTTTAGGGCTTGGGTAGGGACATATTTTT 2348 36 100.0 38 .................................... AGATAGCCGGAATCTTATACCCTTGTGAATCACATTTT 2422 36 100.0 39 .................................... CCTATGGGTGAAGTGTGGGTTGCACAAAGTAATGCTCAA 2497 36 100.0 36 .................................... TTAGGATAGCGAGCTTCTATCACATTATACTGTGAA 2569 36 100.0 37 .................................... CTGACTGGTTAACAGAAACCAGTTTTTTGATCTGGTT 2642 36 100.0 38 .................................... GCCCTGGGACAAACAGGAGCTTCTTGTTCCAAGGGAAA 2716 36 100.0 39 .................................... GGTTGAATATCTTGAGTAGTACTTCTCTGAATTCAAACA 2791 36 100.0 35 .................................... GTGTACCTCCTTTCTCCGTTAGCCTACTGTTTAAC 2862 36 100.0 44 .................................... CCCCTTACTGCTTCCCTTTTACAGCCGCAATATAATTTTGAGAG 2942 36 100.0 36 .................................... TGGGGTTGGGTGTTCATTGTTGTGGGGGTAGTGTGG 3014 36 100.0 38 .................................... ACGTTGTTGGGTTCGCCCAAGCCTGGAAACTTCAGGGC 3088 36 100.0 35 .................................... TATCAAAGATAAGTTCTCTACAGCAGGGGCAATTA 3159 36 100.0 36 .................................... CAGTCAGAGGCGCGGGTTCCAGTAATTTTAATAAAA 3231 36 100.0 39 .................................... CAGCAGCTTTAGAAGCCTTAACGGCTGCTTTGGCATCTA 3306 36 100.0 34 .................................... CTTCAGGCACGTTTTTAATAACCACCAGCTTATT 3376 36 100.0 35 .................................... AGGAGTTAGCTACCGCTCTGCCTGCGATTAATTAA 3447 36 100.0 40 .................................... TTTGATGTGGGGGTTGTGGAGAATCTGAAAAGATTTACGT 3523 36 100.0 40 .................................... GAAATAACCGGGTAAAGGGAAATAACCGGGTAACCAGATA 3599 36 100.0 38 .................................... CTACCTTACTCGTCTGTAGAGCGATAAATTATTTCTGA 3673 36 100.0 35 .................................... GCTAGGAGCTGCATATTTCGTGGGGTTGGTGGGGT 3744 36 97.2 41 ...........A........................ AAGCCTTTACGACCCTCGGCAGTGTTAGACTCATGCAGCTT 3821 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =========================================================== ================== 39 36 99.9 38 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGATTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATGGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCACAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGTAAAGGATAATGATAAAAATAAAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTAGGGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTTGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : TTATCTAATGCTATGGGACTAAGAGGATTGCAGCGATATAGTCTTGACCTTGAAAAAGGCAATTCTTCAAGAGTTGCAATCATCGTCATAATATAGCAGGAGTAAGTGGGTCAGTATACTTGGGACCAAGTTGTCAATAAAAATACTATGACTGCGCTGATGGCTAGGACACCTTGAATCAAGTTTCCCACCAGCGTTCCCACAGTGATTCCAATACCAGCTTTCACCGCAGGCCATAATCTTCTTTGGTAAAGGAACTCACCCACAATTGCTCCTAATAGAGGTCCAAAGAGAATACCTAATAATGGTCCACCAAAAGGTAAAGCGGGTAATAGTCCAAAAAATCCCATCAGTAAACCCACAAATGCGCCAATTTGTCCCCACTTACTAGCACCCGCTTGTTTCGCACCAATATAACCAGCAAGGAAATCAACTCCTGTACTTAGAAGTAAAACAATGATTGTCACAATCAGAGGAATTTTAATAGCAGCAAAGGAGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2309-512 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFD01000719.1 Cylindrospermopsis raciborskii CS-506_D scaffold76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2308 36 100.0 39 .................................... TTAATGCAGCTCGTAGCTGCTTCTCCTCCACCTTTAAGG 2233 36 100.0 35 .................................... TTCTATGGGTTGGGAAGATAGTGGTCAAGTATCTT 2162 36 100.0 36 .................................... TTAAAAGGAGAAAGGGAGTTTTTTATTTCCCTGTTT 2090 36 100.0 37 .................................... TATTTCCCATTTGATCCAGAAATATATTACTGTGCTT 2017 36 100.0 34 .................................... TTAAAAAATCCGTCAAACATTGTTATCAATCCAT 1947 36 100.0 36 .................................... TTTACAGATTGAAGCCAAGAAAGATTTGAGCAGACC 1875 36 100.0 41 .................................... TTTTAGTAATCGCGTGTTTTGGTTGCTCTCGGGTACTGAGA 1798 36 100.0 40 .................................... AGGAAAGGATTTACTGAATCTGGTAGGGAGTGTTGGGTAA 1722 36 100.0 36 .................................... TTTTGTTTTTCGGTTATGAGCTACAAAGAGTCAGAT 1650 36 100.0 41 .................................... ATATTTTGACAGTTGAGAGCGAGTCCAATTGCGTTCCTCTA 1573 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCNTNNN 1499 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1425 36 100.0 39 .................................... ACCCGCAATATCCAAATCTATCAATATTGATTTTATGTG 1350 36 100.0 36 .................................... GGGACTACATCTTTGTATGTAGGCTCTAACACGAAA 1278 36 100.0 41 .................................... GGCACGAAGCCAAGACACTGCCTCCATTCGGCAGCGGTTAT 1201 36 100.0 35 .................................... GCCTCTAACCAGGCTTCAAAGATCCTGGTTACCAA 1130 36 100.0 39 .................................... CTCGTATGTATAATGATATCCAACAGATAGTGTATTCAT 1055 36 100.0 34 .................................... TTAAAAGGGGAATAGGGGGGGTATAAGCGGGTTA 985 36 100.0 37 .................................... TTAATGTTAATGAAATAGTCGATCTTCGGCCATTCAT 912 36 100.0 38 .................................... TCTATATATTCTTTTCTTAAACAACATTTTCAAGAACT 838 36 100.0 39 .................................... ATTTAATAATCATACGGGTTACCGCTTAAACAAATAACG 763 36 100.0 35 .................................... TTAAATACAAGCCATCTGCCCTCGAACGGGGTTAT 692 36 97.2 37 ................A................... TGGGTCTACCGCCCGCACAAGCGGAGGGGGGGGTAGG 619 36 100.0 36 .................................... AAGTAAAATTTTTAAAGGTAAAGAACACTTTAGGGA 547 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 25 36 99.9 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : ATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGG # Right flank : TTTTTAAGCGTTCATTACTACTGTTATTTCCCTAGCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACAACCCACTCCCACAGCCAATCCGCACCCCATCCATTAATCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACACAATTTTTTCTCGCTTAATCAGCTCATCTTCATTTTCAAGCGCGATTACCTCTGGGAAGTGGAATTAATAGAGCTGTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGATCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGNACTGACCAACATCAAGTGATCATCAAAAAATGGAACCTGAAAGTAATGCGTTATTTATAATTAAGCTTCTCCGGTCTAAAGACACGGAGATTTCTGAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 604-2352 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFD01001078.1 Cylindrospermopsis raciborskii CS-506_D scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 604 36 100.0 44 .................................... CTTCAATACTATGCCTTCAGTACCTTCTCATTTACTCATCTCTG 684 36 100.0 36 .................................... TTGGAGGAGTGTGTAGACTCCTTCCGCCGGTTAAAA 756 36 100.0 41 .................................... GAATAGATACAAAGTATATAGGCTACGGTAGCCGCGCGGCT 833 36 100.0 33 .................................... ATTTTACTAACTCACGAGCTAGCCCTTGTTTTT 902 36 100.0 40 .................................... TTACATTTTTGGTAAATTACAAAACTGCTACAATTCTAAA 978 36 100.0 39 .................................... CTTTTAAAGCGTGGCAGAACGCAATAAAAACCAGTGGCG 1053 36 100.0 34 .................................... CTTTTTTGCCCTTCCAAGACAAGACTCCGCTTCT 1123 36 100.0 39 .................................... TAACTCCTCAAGAAGGATTACCTCTTGAGGTTGGAGAAA 1198 36 100.0 39 .................................... ATAACTTGGGATCATTACTGGGATTAACGGGATAAGAAC 1273 36 100.0 39 .................................... TTTTTGGCCTTTTCGGCCTCAAGGAGATTTTTATGAGAT 1348 36 100.0 35 .................................... GACATAGAGTCAGCTAAAAAATATTCCTAGTTTAA 1419 36 100.0 38 .................................... TTTTCTACCTAAATGGAGTAACTCCATTTATCTGTTCC 1493 36 100.0 42 .................................... TCATCTCAGTAATCAAGGGTAGTGGGACAAGCGATTACTAAA 1571 36 100.0 50 .................................... GCTTAACGCCACCGCCTTGTGCCAGCCACCCACGTTACGGGTGACCACTA 1657 36 100.0 36 .................................... GTAAGAGGTGGTAGTTGGGCATCTACAATGGAAGAA 1729 36 100.0 37 .................................... CCCGCCCCAGTGAGGGTTTTTTGTTGTCTAAAAATAT 1802 36 100.0 39 .................................... GGATCTGGTTTAGGGTGAGTAGAGAGAGTAGGTTTAAAA 1877 36 100.0 38 .................................... TGGGCTTGCTCGATGGATTCTACTTGAAAAAGTGGAGC 1951 36 100.0 38 .................................... CCTCAGAACAAAACGCAACCGCGTTGAAAAACAAGAAA 2025 36 100.0 35 .................................... GCGGTTACTGTAACTGTAGGCTGCGCGGCTACGGT 2096 36 100.0 36 .................................... GCGCTCCCCTTTCATTAAACTCTTCAAACTATCCCT 2168 36 100.0 36 .................................... GATTTAAATGAATTTAAACGGATCTAAATCGATTTA 2240 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 2314 36 83.3 0 .......................CT..CGG.....A | A,T,C [2340,2346,2349] ========== ====== ====== ====== ==================================== ================================================== ================== 24 36 99.3 38 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TTTGATCTGTCACAGCTATTGGGTGCGGAATGTGGGATACATTTTTATCCAGACAATGAAATATACCTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGCTATTTACAATAAAAATAAAATATACATAATTTTTAAGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGNAANAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCANTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAAGGTAGTGGAGGTGAAAAACAGATAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGG # Right flank : GTGGTCAAACAGCTTGTTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCNTAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACGTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 10461-12558 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFD01001086.1 Cylindrospermopsis raciborskii CS-506_D scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================ ================== 10461 36 100.0 41 .................................... ACACATGGAGACAGTTAAAACAACTGATTCTAAACAGTCCG 10538 36 100.0 36 .................................... GAGGCATGCCCAAAAAACTCCAAGGGACACTTCCTA 10610 36 100.0 38 .................................... GAACTAGCTTAACTTGCGCAACCATAGAAGATTAAAAC 10684 36 100.0 29 .................................... CACCCCACAGCCCCCACAGCCACCACAGT Deletion [10749] 10749 36 100.0 35 .................................... GATCCACCTCATACTCAAGCTCAAGAGCCTTATAA 10820 36 100.0 37 .................................... CTCCCGAAGAGTCCTAAGAAATTATCTCTTGCAAGAG 10893 36 100.0 37 .................................... ACACTGAAATTCCAAAATATTTTTTTGGTATATCTTT 10966 36 100.0 37 .................................... CTAGTCTCATACCTACCTGGAAACGCTTACATGAAGC 11039 36 100.0 34 .................................... ATAATAGTTGTTTTTTAAACTATTATCAAGGTTG 11109 36 100.0 37 .................................... CCTCTACTATTTGTCCATTGGCATTGCTATCTAATAC 11182 36 100.0 40 .................................... GGACTAATAATCGGTAGACACAGCTCTACCGTAGGCGACT 11258 36 100.0 39 .................................... ATACAGAAACTCTTAATTTAGTGTTACCTAGATACTTAG 11333 36 100.0 39 .................................... AATCTTTAAGATAGCTCCTGAATGAATAGGAGAACGAAA 11408 36 100.0 35 .................................... GCTGAAGCATATAACAATAATGGAGTTGATTTAAA 11479 36 100.0 35 .................................... CTATGATTTGATGATCCACTGGACCACCATAATAA 11550 36 100.0 39 .................................... GAAAAAATAAATTGACTTTACAGCTTGTTGCGTACAAAT 11625 36 100.0 36 .................................... CGTGTATATGAGGGATAGTCCCATACATTATCTGGA 11697 36 100.0 36 .................................... GGAAATAACACTGCTGTTGGAATCAATGCTCTTTTT 11769 36 100.0 37 .................................... TTTGCAACTTCTCCGAAATGGAATCTTCAGTTAGTCG 11842 36 100.0 38 .................................... CAACGGGCTTCCAGCTATTTTAAAATATTTTCTAAAAA 11916 36 100.0 39 .................................... TGTACCTCTTTCCTTGTCCATTGATAGCATTGGACAGGT 11991 36 100.0 36 .................................... CAGCATCTACAGTAACTGTAGGCTGCGCGGCTACTT 12063 36 100.0 36 .................................... CAGCATCTACAGTAACTGTAGGCTGCGCGGCTACTT 12135 36 100.0 34 .................................... TCTGATAAATACATAATCAATCTCCAAAAAATAA 12205 36 100.0 38 .................................... CCAGGGATTTACTTCCATGGGTTAGGGCATCTATCTGT 12279 36 80.6 64 ...........................NNN.NNNN. CTCTGGGAAGTGGAATCAATGGAAACCTTTGGTAGCACCAGCGGACACCCCCAGGAGCTTTCTA 12379 36 100.0 35 .................................... AATTCCTTCTTCAGGAAGTGGGTCGGCACTAACAA 12450 36 100.0 37 .................................... ATCGTAATCCCTGCAACCCAACTCTGGCGAGTTGGTC 12523 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================ ================== 29 36 99.3 38 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTGTCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGTTAGGTAAAGTTTTAATCTATATGATATTTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGAATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAGTAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : CGCATTGTCTTTAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTATTGATGCTAAGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCCTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAGAAGTTGAACCACAAAAACAGTTAATTGAGTTATCTTTATGAAATCCGTTTCTGGTAAGTCTCTGTGTAAGATTGTTGAACGCTATGGATGGAATCTAAAAAGGATTACAGGTAGTCAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //