Array 1 361925-362686 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWXP01000008.1 Proteus hauseri ZMd44 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361925 29 100.0 32 ............................. TAACGGTGCTCAAATTTCATTTATTAGAGAGC 361986 29 100.0 32 ............................. CATAATTCAGTCGATTACGGGGCTAATATTGA 362047 29 100.0 32 ............................. GTTGGTCGATAAAATAGGTAATGTTTCTGATT 362108 29 100.0 32 ............................. TATTACCATATATCAAACGATGGTTATGTTTA 362169 29 100.0 32 ............................. TCGTATGAATGGCAAGAAAGCGTTCACGGTAA 362230 29 100.0 33 ............................. CATGGGATGCTATGCTTGATATCGGAAGAAAGC 362292 29 100.0 32 ............................. GCAACAGCTCGGAGTCAAAAAAAACACAATTG 362353 29 100.0 32 ............................. CGCCACAACTTAATAGAGTACAGCCGTTAGGT 362414 29 100.0 32 ............................. CTAATGGAGTAGCTGAAAGTAGCATTTATTGG 362475 29 100.0 32 ............................. TTATCAAACTGCGTAAAGATGATGAAATAGAT 362536 29 100.0 32 ............................. CTATTCGTCCTACTGTTAATTATGAACAACCA 362597 29 100.0 32 ............................. CGTTTATCATTCACTTTCACACCAGGGCGTAA 362658 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : TAGTACCTAATGCCAAGCCCGCTTTAGACTGCCCAGTCGTATTTCCTTATGCACCTAATGCAGTATTAGTGGGTTTTTTGAGTAGCTTTGCTGCCGGTGTTATCGGTATGTTCATCCTTTATGCCTTAGATTGGACGGTGATCATTCCGGGTGTTGTTCCTCACTTCTTTGTAGGTGCAACAGCAGGGGTATTTGGTAATGCGACTGGTGGACGCCGTGGCGCTATTTTAGGCGCATTCGTTCAAGGTTTATTAATTACCTTCTTACCTGTATTCCTGTTACCCGTACTTGGTGATATCGGTATTGCTAACACCACATTTAGTGATGCAGATTTCGGTGTTATCGGGATCTTGTTAGGTATTATCGTTCGCTGATTATTTTAATAATTAAGATATATAAACGCCTCATTGAAATTAATTCATTGGGGCGTTTTTTTATGTTTTTTTGGTAAAAAAGAGAGAGTTAAATTTCTTTTTTATATTCAATCTATTATGATTAGA # Right flank : GCGCAATTAAAGGCATTCCTTTGTTAATAATAATTCGTGTTTCCTATAATTGTTGGGATAATTATTTTTCAATATAGATTCTTCCTAAGCATATTTAGGAAGATAAAAATGAGAGATATTTTTTATTTTTATTAACTATAGCATTATCGCCATGAAAACTATTAATGGGATATAGATTCAAATACTAGAGTTATAAATAAGAGTTAGATCTAACTTTACATATTAAATTTAGAATGTAGTTACTACTTATTATAAACTTTAAAATATGAAGAAATAGTAATTAGGTTAATATGAATAAAGACTATTATAACTATTGGGGTAAATTTAAATTAGATAGTAATAGTGAGTGTTATCACTTACTTCCTTACCATAGTCTCGATGTAGCAGCTGTTGGCTCTATATTATTTTCAGCAGATACAAAAATTGTAAAAGATATTTCTAATTTTTTACAGATTAACCCTGAAGACTTCGTTAAATTATTTTGTTTTATACTCTCACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 371607-372371 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWXP01000008.1 Proteus hauseri ZMd44 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 371607 29 100.0 32 ............................. GTTGGTGGTTGGCATGAGTGTAAAGGTAGAAA 371668 29 100.0 32 ............................. GTGAGCCGATATTTATAGGGATGGACTTTAAC 371729 29 100.0 32 ............................. GCATGGCTGATTCATTGGCGGGCTTACTGGGA 371790 29 100.0 32 ............................. CGAAGTTTTATACCTAATGCACCATTTTGTAA 371851 29 100.0 32 ............................. TTAATAAAGAAATTCTGGCAAAAATGGCTCAG 371912 29 100.0 32 ............................. GCTCCACCTTTTGACCCGCTTTCTTACTGCGA 371973 29 100.0 32 ............................. TTTTTGTTGGTGGCGATACTGTTTATTGTTGC 372034 29 100.0 32 ............................. ACACCAGAAATTGATAACTGATTGATTATATA 372095 29 100.0 32 ............................. AAATTATTCCTTGCAACTCATCACTCAATATC 372156 29 100.0 32 ............................. GCTTGATAATGATTCGGTGTGGTTGGTTTGTT 372217 29 100.0 32 ............................. TCTGTGCATTGACAATAAAGGTCAGCAAATTG 372278 29 96.6 32 ........T.................... GTTTTACAACGTTAGATAATGAAATTAGTGAT 372339 29 86.2 0 .................AT..C.....A. | AAA,G [372356,372366] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : AAACGTTAAATAAGCTTATTCCTTTAATTGAGGAAATTCTTTCTGCTGGTGATATTTTGCCACCTGAACCACCATCTGATGCTCAACCTCCTGCGATCCCTCAAGCACGGCCTTTTGGTGATGAAGGTCATAGAGAAAAATAGCAATGAGTATGATTGTCGTTGTTACTGAATCTGTACCACCTCGATTAAGAGGTCGATTAGCCGTATGGCTATTAGAAGTTAGGGCTGGTGTTTATATAGGTAATGTCTCAGCACGAATAAGAGAGATGATTTGGCAACAAATTAATGTATTAGCAGAGGATGGCAATGTTGTTATGGCATGGGGAACAAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGAGAAAATCGCCGTGAACCGATTGACTTTGATGGTTTAAGGTTAGTGTTATTTAAACCGTTAGAAGAGGAAGAATAATATTTGGTAGAAATAAATATATTTTTTTATTTAATTAAATCAATTAAATATATTTAGA # Right flank : GTGCTTATGGCGAAAAGTACCCTCACATATTCCTTCGAGTGAATGACCCGAGATTTATCCGACCATGAAAATGGAAATGGATGCCTTTCAAACCGTATTAGGATAATAATGATGGATATTTATGGATTATTTCCTCAGTTTAAACTCAATCGTCCACTGAATGACCGGGAGCGTGCCACACAATTAGACCAAACGGTACGGTTGGATTTTGAACCGGACCAATTAATGTTTGATTTGAAAGTGATTGAAATAAACTCACACTACTTAGAAACGGTGGATAAATACTATTCATCAAAAGGTTATCTAAGTTTTATTGCCTCGGCAGGGGCTTTTATGCCGATTATTACTTATTTAGCTATAATAATATCGACTGTATATATTGGTGATTATAATTTAAAAAAAATGTTAGCGCTTTTATTTATGGGGGCGATTTTTATCTCTACAGCATTCGGGATGTTGTTTTTCTTAAAAAAAAGAGTGGTTTGCTTGGACACACTACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //