Array 1 14194-11296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBT010000011.1 Salmonella enterica isolate 8876_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14193 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 14132 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 14071 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 14010 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 13949 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 13888 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 13827 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 13766 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 13705 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 13644 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 13583 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 13522 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 13461 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 13400 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 13339 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 13278 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 13217 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 13156 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 13095 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 13034 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 12973 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 12912 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 12851 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 12790 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 12729 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 12668 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 12607 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 12546 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 12485 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 12424 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 12363 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 12302 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 12241 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 12180 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 12119 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 12057 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 11996 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 11935 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 11874 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 11813 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 11752 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 11691 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 11630 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 11569 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 11508 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 11447 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 11386 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11325 29 93.1 0 A...........T................ | A [11298] ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31528-30463 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBT010000011.1 Salmonella enterica isolate 8876_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31527 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 31466 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 31405 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 31344 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 31283 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 31222 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 31161 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 31100 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 31039 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 30978 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 30917 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 30856 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 30795 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 30734 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 30673 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 30612 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 30551 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 30490 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //