Array 1 11-1563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUP010000022.1 Lactobacillus delbrueckii subsp. lactis strain FAM 22274 FAM22274-i1-1_scf22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 ............................ TAAACGACCTTTAATCAAGTTTGCCAACAGACC 72 28 100.0 33 ............................ TTTACATCAACATCTTTCAGAAAGCTATCTTCA 133 28 100.0 33 ............................ TTTCTTTAGTTACGTAGTTTTTAAAATTAGTCA 194 28 100.0 33 ............................ TAAACGACCTTTAATCAAGTTTGCCAACAGACC 255 28 100.0 33 ............................ CGTAGTCGATGTCAAAGCCCCAAACGCCGTTTG 316 28 100.0 33 ............................ TGAGGCGGTCCGGGATCGCATTGCGTCCGCGAC 377 28 100.0 33 ............................ TCCAGACGCTGAAGACACGACGCAGGCACGGAG 438 28 100.0 33 ............................ CTTACCAAAAAATCGACATCGTAGGCGAACACA 499 28 100.0 33 ............................ TTTACATCAACATCTTTCAGAAAGCTATCTTCA 560 28 100.0 33 ............................ TAAACGACCTTTAATCAAGTTTGCCAACAGACC 621 28 100.0 33 ............................ CACCGTTTCAAAATACAGCCCCTACTTTAAGGA 682 28 100.0 33 ............................ TTAAGCGAGTTCGGATTAGTGAAAATGATCGAT 743 28 100.0 33 ............................ TAACCGACTTCGCTTAAAGCCCCGGCATCAAAC 804 28 100.0 33 ............................ TTAAGCGAGTTCGGATTAGTGAAAATGATCGAT 865 28 100.0 33 ............................ CCACCTCTTTACTCACGCGTATCACTTCGCCCG 926 28 100.0 33 ............................ TTTCGCAACCAGTTCAAAGGTATATCTTGAAAG 987 28 100.0 33 ............................ CTTATCACTGTAACTATTGCGGGCGCTATCACG 1048 28 100.0 33 ............................ TAAGCAGCTCAAAAAACCACTAGATTTAATCTA 1109 28 100.0 33 ............................ TAACCTCATCATAGTAAACTTCTTCGTTATTTT 1170 28 100.0 33 ............................ TTTTGTAGCTATCGACTTGAAGACCTTGACGGA 1231 28 100.0 33 ............................ CTCTTTTTGTGTAGTATGTAAAAGTGTAACACG 1292 28 100.0 33 ............................ CTTTTTTTGAAAAATCTATAGCGCCTTGCAAAT 1353 28 100.0 33 ............................ CGACTGAGCTATATGATGAGTACAGCTCAGACT 1414 28 100.0 33 ............................ TGGTCTTGATCAAGAAAGTCAAGCTGCCACAAA 1475 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 1536 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.4 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GCTATCTTCAG # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5911-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUP010000030.1 Lactobacillus delbrueckii subsp. lactis strain FAM 22274 FAM22274-i1-1_scf30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5910 28 100.0 33 ............................ TCTATTCCGGCACGGTCTTCGTTGGTCAAAATG 5849 28 100.0 33 ............................ GCGCAGAGAGCCACACTGGACTGTATGATGAAA 5788 28 100.0 33 ............................ CTTTTTCAACGACACGGTACCACGGATTTTGAA 5727 28 100.0 33 ............................ GCAGACTACCCAGCTGGTACTTTGCCTATGGAG 5666 28 100.0 33 ............................ TCTTGCAAGGAGGGCTTACTAATGAGAAGTAGA 5605 28 100.0 33 ............................ TAGTTGCGGTGGTTCAACAGGTGGGTGCTGCCA 5544 28 100.0 33 ............................ CCTTTTTGATGTTCTTGACGGGGCGCGACTGGC 5483 28 100.0 33 ............................ TTCACCTAAGTCTTCGTGGTTAACCTTTACGTT 5422 28 100.0 33 ............................ TAAAAAAGTTAGCTTTTACGCTTGTATTACCAG 5361 28 100.0 33 ............................ TTTTCGGCTGCCAAAAAAACGCCCCCAGTCAAA 5300 28 100.0 33 ............................ CTCAACCGCAAATTCTTGCAAGTCCTCGATAGG 5239 28 100.0 33 ............................ TTTTTTGATCACTAGCAGGCAAGGCGGGCCGGG 5178 28 100.0 33 ............................ TCAATCAACAGCGTTCTGTGGTAGTGGTAGACA 5117 28 100.0 33 ............................ CCGCTTAGCACCTTATGACTACTACGCAGTTCC 5056 28 100.0 33 ............................ TAAAATTGATGTGAGAGTGGAGGACTTATGTTA 4995 28 100.0 33 ............................ TGGTTGAAGGCCCACAAGTCCAGTGGCTGATTG 4934 28 100.0 33 ............................ CTCTTTGAACTGTATCAATTGTCACCTTGCTCA 4873 28 100.0 33 ............................ TCTTCAGCCCGGCAAATTCACGAGCACCAGTCA 4812 28 100.0 33 ............................ TCCTTCGCCGCTCATTCGCCATGGTGTTGCAGT 4751 28 100.0 33 ............................ CTAGCCCAGCCTATGTAACACCAAAGCTCCATA 4690 28 100.0 33 ............................ TTGCTGGCGATCCCAAAAAGCGTGGTAAAAAGG 4629 28 100.0 33 ............................ TGTTACTGAGGTGGATGACTGAGGCGTGAGGTG 4568 28 100.0 33 ............................ TCTGTTATACACCTACGGTCGCTACGGCTAGAG 4507 28 100.0 33 ............................ TATGAATTGGAAGAGCCGGAAGTGATGGAGCGG 4446 28 100.0 33 ............................ AATTTCGGGGGTCATATCATTTTTAGCGTCCTA 4385 28 100.0 33 ............................ TGACTGGTGCTCGTGAATTTGCCGGGCTGAAGA 4324 28 100.0 33 ............................ CCAAGATATTAAGGTTATAACTGAACATCTTAG 4263 28 100.0 33 ............................ TCATCGATAATCCACACCCCCCAGCCAATTAAA 4202 28 100.0 33 ............................ TCGTAGGTGCGGGCAGGGCCTGCAACCGAAGGA 4141 28 100.0 33 ............................ CTTACAAGCGGCTGCGAACAACTTAGAAGCGTT 4080 28 100.0 33 ............................ CAAGTTAGCAGCAGTATCGTCACCGCCTACCCA 4019 28 100.0 33 ............................ TACGCCAGCTGGCAGCTGAAAGACACAAAGCCT 3958 28 100.0 33 ............................ CATTGGCCAGCCGCCTCAGTCTAAAGTTGGGTT 3897 28 100.0 33 ............................ TTGGGTCCTATCATCCAGTTGCCCTTTTTTTAT 3836 28 100.0 33 ............................ TAAGAGCATACCGGGCTAGACTGAAGGCCAGCC 3775 28 100.0 33 ............................ TTGATAATTACAATAAGGCCCAGGAAAACCTTA 3714 28 100.0 33 ............................ CCAGGCTAGCAACTGCTCATAAGTTGCGTTGTC 3653 28 100.0 33 ............................ TGTCTGGCTGACAGCAGTCCACCTCACGCCTCA 3592 28 100.0 33 ............................ TCAAAAGCCTTCTCGATCGCGTCGTAGTTGGCG 3531 28 100.0 33 ............................ TAAAAATCATCACCGACATTCTCAAACTCGGCA 3470 28 100.0 33 ............................ GGGGCTTGCATTACCAGCGGTTAGGTGTTAGTA 3409 28 100.0 33 ............................ CTTATTTTGACCACCCCTATCTGTCAAGGCGCG 3348 28 100.0 33 ............................ TCTTCCTAAGGCGAAAAGAAAAAAGGTGAAAAT 3287 28 100.0 33 ............................ CAGAAGGCACAAAAAGAAGCCCTGGACGAATAC 3226 28 100.0 16 ............................ TTAAGAGTGTAAAGAA Deletion [3183] 3182 28 100.0 33 ............................ TCCTAACGCTTTTCCGTTGGAAATGCAAGCATT 3121 28 100.0 33 ............................ TGAGTAATCTAGCTCAAACACCCCGGTGGTTAA 3060 28 100.0 34 ............................ CTATGTTGACGTAACGAAGGCCCTGGGCAACTTG 2998 28 100.0 33 ............................ CCCCAAGGCGTCAAAGCAGGTGGACAGCTCCCG 2937 28 100.0 33 ............................ TTAGCGACTTAAAAGGTCCAACCAAGGTTACGA 2876 28 100.0 33 ............................ TCTAAGGGTCCACATAATGGCCGGGCAATGGGT 2815 28 100.0 33 ............................ CGTCTCTGATTGACCAAAGGCCAGCGGCATCCA 2754 28 100.0 33 ............................ TTGGAAAGACATACTAGCCAAATCTCTCCCACT 2693 28 100.0 33 ............................ TATGTGTGGTTATACTTAGCCTTGACCTTGGGG 2632 28 100.0 33 ............................ TACTAACGCATTACCGCTGGTAATTCAAGCTTT 2571 28 100.0 33 ............................ TCAGTGGCGGCCGCAATCAGGTCCCGGACTTCT 2510 28 100.0 33 ............................ TCCTCCTTAGCTATCGTGTACTATATAAGTACA 2449 28 100.0 33 ............................ CCAAGATAACAACTGCTCATAAGTTGCGTTGTC 2388 28 100.0 33 ............................ CTATCATCAATGTCTTCCCAATCAGCAAGATCA 2327 28 100.0 33 ............................ TGGATTTCCGACTACCAGCCGCGAACTGCCAGA 2266 28 100.0 33 ............................ CGTGCTTTTTTTACCCGGCTAAAAACCCGGTAC 2205 28 100.0 33 ............................ TGACTACTGACTTACCAGACCCAGGCGGGCTGA 2144 28 100.0 33 ............................ TACCGTCCCTGGTCCGCTGCATGAAGGCATGGG 2083 28 100.0 33 ............................ TTGCAGGTAAGACTTCGCCAGCTACCCAGTCTT 2022 28 100.0 33 ............................ CATGTTTCCGTTGGAAATACAAAACTTTTTTAG 1961 28 100.0 33 ............................ TGTAGAACGGAGATTCCTCCGTTACTTTGCCGT 1900 28 100.0 33 ............................ CATCTAACCACTGGTAATGCAAGCTTTTGGCAA 1839 28 100.0 33 ............................ TCGCTATTTTCAGCTGCAATCTTCTGCATTAAA 1778 28 100.0 33 ............................ TAAGAAAGGAGAACTAAAATGAAAGATATAGCA 1717 28 100.0 33 ............................ CAACCGAACTTAGCAGCGAACCGACTTCGCCGG 1656 28 100.0 33 ............................ ATTGCGGCCCGTTCGTCCTGGTCTTCGGCCTCT 1595 28 100.0 33 ............................ TGCCAGCACCATTTCCGACTTGGTAACGCAAGG 1534 28 100.0 33 ............................ CAATGACGTCTGCTTCATCTCTGAGCTTTGTTA 1473 28 100.0 33 ............................ TTCCTATCGACGACTGGCTTGAGTTCTTTGGGT 1412 28 100.0 33 ............................ CTATCATCAATGTCTTCCCAATCAGCAAGATCA 1351 28 100.0 33 ............................ TGGATTTCCGACTACCAGCCGCGAACTGCCAGA 1290 28 100.0 33 ............................ CTTCACGCCAGCATCAAAGAGCTAGGCGAAATA 1229 28 100.0 33 ............................ TACTTGCGGGCTTGGCCTTTTGATGTGGCATAG 1168 28 100.0 34 ............................ TAAATGAGACCTTCAGCAAGGTTCAACATCTACT 1106 28 100.0 33 ............................ TGTCACTAGATATCCCAAAAGCAGAAGCTAATT 1045 28 100.0 34 ............................ CTCAAGAGATCAGCAGATGGACAGGACTCAGCAA 983 28 100.0 33 ............................ TCGATTTCATCCCGTTCCAGACGTCGCTAAAGA 922 28 100.0 33 ............................ TATCATCACTAAGCTCTATGTCTTCGGGCCAAA 861 28 100.0 33 ............................ CAAGCGCCAGGTTCTCCTTGGATTGGTGCGCCC 800 28 100.0 33 ............................ CAAGCGCCAGGTTCTCCTTGGATTGGTGCGCCC 739 28 100.0 33 ............................ TTAAATCCATACTGCGTTAAATCAATCCGGTAA 678 28 100.0 33 ............................ TAAGGAGCTGAGTCTTTGCGTTGTCTAGCTGTA 617 28 100.0 33 ............................ CATAGAAGTCCCACTCATCCGCTTGAGACCATA 556 28 100.0 33 ............................ TACCCCGTTCTAGATCGGGAGTCAACACAAAAA 495 28 100.0 33 ............................ TGTTCATCGGCAAAGCCTTCAAGTCCATTACAA 434 28 100.0 33 ............................ TTGGTAGCAATCCAAAACAAACTCTTAAAGAAG 373 28 100.0 33 ............................ CGTGTCATTTCTTGACTCACGCAATAGCGTTCA 312 28 100.0 33 ............................ TGTAGTAATCGCCGTTAGATATATCAGCCCAGA 251 28 100.0 33 ............................ TTTTACATGGAAGTAAACGACTTTAACCGGGCT 190 28 100.0 33 ............................ TATAATGAAGCTGATAATCTTGCTGGAGAGATG 129 28 100.0 18 ............................ CAAGCGACTCATACGCCC Deletion [84] 83 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 97 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CTTATGGCGGCGATTAAACAAGGTGAGTCATTGAGTATTCCCCACGCAAGTGGGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //