Array 1 146586-147025 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIEU01000108.1 Enterococcus plantarum strain TRW2 scaffold-109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 146586 34 97.1 32 .................................T CGGTATTGTGCCACGATTTATTATGTTGTTTA 146652 34 100.0 34 .................................. TTGATTCCGAATTTCAGTTTTGATTTTGAGTTAC 146720 34 97.1 32 .................................C TAAAGCGAGTAAATCGTCTGCCATTAGTTGGT 146786 34 97.1 34 .................................G GAAGAATATGTAATCATGGATAGCGTACCAGTAG 146854 34 97.1 34 A................................. ATAGGTTTAGATTCTGTTCCGTCATCCCCCATCA 146922 34 97.1 33 ...........T...................... ACACCGTTTATTACTATTAATGGAGAACCTGCA 146989 33 82.4 0 ...........T..........ACT...-....T | AC,C,G [147011,147018,147023] ========== ====== ====== ====== ================================== ================================== ================== 7 34 95.4 33 GTCTAGCTCTGCATAGAGCTAGTGGATTGAAATA # Left flank : TTTAGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGCTCGAAGAATGGAACTTGCCGTTTGAGAAAGGTAGCAAAAAAATGCCAAGATTATGGACAGCGTGTTCAGAATTCTGTTTTTGAGTGTGTTGTTGATGCAACGGAGTTAACTCGCTTGAAAAAAGAGTTGATTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTATAGATTAGGGAATAATTATCAAAATAAAGTAGAGCATATTGGTGCAAAAGAAAGCTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAAAATTGGTGCGAACCCCAAGTGCACATGAAATCACTGGGGGATCCGCACCAAATTTTAGGTATATTTTGTTTAAAAAAGCCGTTTTTCTCATCTGAATTTAATTTTCAAAGTATTTTTTTGTGAGAAAGTAAAAACATGTCATGTATTTTTGCTGTTTTCACG # Right flank : TCCAAAATAACAATTGCTGATTCATATTGCTCGTCTTATTTAAAAAAATTCTATACAATATAAATGGAGACAAGTAAAACGGTAGTGGAGGGAAATGAATGAATAACGTGATGGAACAATTAAGGAAATATGCATTATTACGAGGAATTGTTTATATGATTTTTGGATTGTTGATTGTGATCAATCCTAGGAGTGTGTTCCAAGTCGCTGTTTACTTTATATCAGCTTATATTGCAATCAGCGGTGTATTAAATCTTTACGATGGTGTTAAAGTCAAAAAAGCAACCGGTACCTATGGAATGAGTTTTCTAGGTGGAATCGTCTTATTAGTGATTGCAGGAATCGTGCTTGTTTTTGCGAAGGGAATCGTAAGTATTTTACCGATTTTCCTAGGTCTTATGATCGTGATTATTGGCGTGACTCGTGCGATTCAATCCGTAAACTTACGAACATATGTCAATGTTAGTTGGATGCCGATGTTGATTTATAGTGTAGTTTTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGCATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1840-989 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIEU01000031.1 Enterococcus plantarum strain TRW2 scaffold-31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1839 33 100.0 36 ................................. TGTGGGGGTTTTGACATTAGGTAATAGCGTACTTAG 1770 33 100.0 34 ................................. TCCATAGCTGGTGTAGCATTTTTGGGTAATCTTT 1703 33 100.0 37 ................................. ACCGTATATCGTATCGTACAGAAAAAAAGCACCTAAC 1633 33 100.0 34 ................................. AAAACGCAAACTATTAGATTTTAATATAGCGGGT 1566 33 100.0 35 ................................. AATGGGTAGTATCATTTCAGCCGTTGGGTTTATAA 1498 33 100.0 35 ................................. TTTTGGGTATGTTTACGACGGCATAAGAATAACAT 1430 33 100.0 34 ................................. ATTGCCCGATACACATGAATACTTGATTCAAAAC 1363 33 100.0 34 ................................. GGATCAAACATTTTGAAATATCCCCCCTTATTTA 1296 33 100.0 35 ................................. GAGCTGGGGGAACGGAATGTACGCCAAACGAACTC 1228 33 97.0 34 ..............G.................. TTCACTGCATCAATATACTTTTTGCTATCTTCTA 1161 33 100.0 37 ................................. GCATTGAAGGCGGTGCTGATTTAAGAGACAACGGGAC 1091 33 97.0 35 ............A.................... CCCTCTTCGGTAACACACGTGCTACAGATGTACTT 1023 33 84.8 0 ...............A......ACC...A.... | TT [997] ========== ====== ====== ====== ================================= ===================================== ================== 13 33 98.4 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGAAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCACTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACACTCATGTAGTTTGGCAAAAACGAATATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAACAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAAATACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGGTTTTAGCTAGGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : CTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAAGGGTTTATTTTAAAAGATATTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGCAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATTG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //