Array 1 314993-316081 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTIO010000005.1 Listeria welshimeri strain FSL W9-0998 NODE_5_length_321506_cov_108.665719, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    314993	    36	 100.0	    30	....................................	CGGACTTCGAAATCAGTACTACAAAGATTA	
    315059	    36	 100.0	    30	....................................	ATATAACTCACTCATATTCTTACAGTCACT	
    315125	    36	 100.0	    30	....................................	TGGCATGGAACGTGCCGGTCATAAGTGTGT	
    315191	    36	 100.0	    30	....................................	TGAAGAGTAAATTATTAGTTGTTATTAGTT	
    315257	    36	 100.0	    30	....................................	TTGTGTTGGGTTTGCATTAATGGTTGTTTT	
    315323	    36	 100.0	    30	....................................	GATACCAATGAACGCAAATACTGGAGCATA	
    315389	    36	 100.0	    30	....................................	TTCCAAGCGGGCACCCCTGCATCTACTAAG	
    315455	    36	 100.0	    30	....................................	AGTATCACAAAAACTATCTGAAAAAGTTGG	
    315521	    36	 100.0	    30	....................................	TTCAGGGCCTTAGCTTGTTTGAGTTGACCA	
    315587	    36	 100.0	    30	....................................	CTCAACACAAGACAGGTGGTGACAGTGATA	
    315653	    36	 100.0	    30	....................................	AGTCCCGAATTTTACATATCTAGCAATAAG	
    315719	    36	 100.0	    30	....................................	GATGCAAAGTTATCAACGGATGATGACGTG	
    315785	    36	 100.0	    30	....................................	TTAAATCAAATATAACTATGTAACCACCTG	
    315851	    36	 100.0	    30	....................................	AAGCAAAATTGCTGAAGAGCATCCGATTTT	
    315917	    36	 100.0	    30	....................................	TTCTTCTCGGTATTGCGGTGATGGTTTGCT	
    315983	    36	  97.2	    27	..........................T.........	GAATATTCTCCCCCATCGCTAACAGGG   	
    316046	    36	  72.2	     0	............CA.....C.....ATC.A..C.CA	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  98.2	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                              	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAATACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  AAAGATAAAATTCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACCCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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