Array 1 309685-310506 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLY01000055.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 607309-5 SEEH3095_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 309685 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 309746 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 309807 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 309868 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 309929 29 100.0 33 ............................. GCGAGGTCAATAAAAAAATGGTGTGGCTTTACC 309991 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 310052 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 310113 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 310174 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 310235 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 310296 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 310357 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 310418 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 310479 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4369-6032 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLY01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 607309-5 SEEH3095_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4369 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 4430 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 4491 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 4552 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 4619 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 4680 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 4741 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 4802 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 4863 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4924 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4985 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 5046 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 5107 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 5168 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 5229 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 5290 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 5351 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 5412 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 5473 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 5576 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 5637 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 5698 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 5759 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 5820 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 5881 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 5942 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6003 29 96.6 0 A............................ | A [6029] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //