Array 1 47093-45275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPO01000008.1 Neisseria meningitidis strain NmJX80281 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47092 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 47026 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 46960 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 46894 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 46828 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 46762 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 46696 36 100.0 30 .................................... ACAATTCCCCACCAATCGACACTATAAGAA 46630 36 100.0 30 .................................... ACAATTCCCCACCAATCGACACTATAAGAA 46564 36 100.0 30 .................................... ACAATTCCCCACCAATCGACACTATAAGAA 46498 36 100.0 30 .................................... ACAATTCCCCACCAATCGACACTATAAGAA 46432 36 100.0 30 .................................... AAAATCACTTCCTTATATATCCGCCACGTC 46366 36 100.0 30 .................................... TGGTTCACGCTGACGGAGAACATCGGCAGG 46300 36 100.0 30 .................................... GCCCACACGCCGCCTAGCACGCCGCCGAGA 46234 36 100.0 30 .................................... CACGCGACAAGTACAAGCTAACCAACAGGT 46168 36 100.0 30 .................................... CGAATATATCAAGTTGGCTCGGATGCTGAG 46102 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 46036 36 100.0 30 .................................... CCACCGCAGAATGCCCCAAAGAAGAGAAAG 45970 36 100.0 30 .................................... TGTGTTCAATGCGCGCATCGGTTTGTTTAA 45904 36 100.0 30 .................................... CAGTTGCGGCAGCTTATGTTCCATTTTGTG 45838 36 100.0 30 .................................... GCCTCATCGCCGCGTTTGACGAAATCCACG 45772 36 100.0 30 .................................... GCGCCCTGTTGGCGGAAATCGCCCCCTTGA 45706 36 100.0 30 .................................... AAGCAACGCGTGCTTTAAACAGCGCGGCTT 45640 36 100.0 30 .................................... TACCAAAGGCAATTACTATATTCGTAGCCT 45574 36 100.0 30 .................................... ATTATTCTGACAATCAGCATTTTCAGAAGT 45508 36 100.0 30 .................................... CCGCCGTTCCAATCAAATGTGCAACTATTT 45442 36 100.0 30 .................................... TTTTCATTGTAACATAGTTGCTTGCTCCAA 45376 36 100.0 30 .................................... AATGGAACACACAGACGCACAAGGTATTGA 45310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //