Array 1 100299-101732 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHQP01000007.1 Pseudomonas sp. o96-267 strain 297 NODE_7_length_174395_cov_36.5572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100299 29 100.0 32 ............................. GCAAACCCCTGTTTTTACAGGCCTCCTCTCAA 100360 29 100.0 32 ............................. GAGCTTCTCGACCGTCACGGGCGCTATTTGAT 100421 29 100.0 32 ............................. GCGCCTTTTTCATGCCCGTGCTACATGCACAT 100482 29 100.0 32 ............................. CTGGGCCGGTTCAAGAAGGCGGGCGAGTTCGA 100543 29 100.0 32 ............................. CGAAACCGCATTTGACCTCGCACCAGCTCGAG 100604 29 100.0 32 ............................. GCAAGTGCCGGCGCATCCAGCACCGCATCGAT 100665 29 100.0 32 ............................. TCGGTGGGCTTGCGGCCACCCGGCTTGCCGAT 100726 29 100.0 32 ............................. GCATCGTCATTCGCCCCTGACCGCCAACCGGA 100787 29 100.0 32 ............................. GCCGACGAGGTCGCCTGCGAGTTCGAGGAGAC 100848 29 100.0 32 ............................. ACCCAGCAGACCTCGACACCACCATCCTGCTC 100909 29 100.0 32 ............................. TCGCCCTTGAGGCCCTGCAGGCGCGCGATCTG 100970 29 100.0 32 ............................. TACAGGGCTTCGAAGTAGCAGTTGGCGATTTC 101031 29 100.0 32 ............................. CGGATCCGCGCGCGCGTGGTGGTCGACGGCGT 101092 29 100.0 32 ............................. AGATGAAACGCCGGTCGATCCTGTCGCCAGAG 101153 29 100.0 33 ............................. GTGGACGAGCTGGAGCACAGCGGCGCGCCCGAC 101215 29 100.0 32 ............................. CGCCTGATCGTCGCCATGACGCCCGACATCAA 101276 29 100.0 32 ............................. TCGATCACTGACGCCAAAAAGCAGGGCCACGA 101337 29 100.0 32 ............................. GCGAAGGCGCGCAGTTCGGCGCTCATGGCGTT 101398 29 100.0 32 ............................. TTCACTCCGGCGCGTACGGGGCAGAAGGTGTG 101459 29 100.0 32 ............................. TCTGATGGCCACCGTACAGCAGCCCGTCGATA 101520 29 100.0 32 ............................. CGCGCATTCATGGCGTCTGTCGTGGATCTCCA 101581 29 100.0 33 ............................. GTCCTGCCACCACTCCATCATCGCCTTACGCTC 101643 29 100.0 32 ............................. AGATCCCCAGTGAGGAGATCGAGGGCGAAGAC 101704 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 33 GTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : AGGAAACCATCCTGCCGCGTCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCCGGCAACGTGCAATGCCTGGACGTGCTGCGCGCATTGTCCAAGGAGCCCGGCGTACTCGATGCGTTGTTCGCCGAGCTGGGCGATGGCCATGGCGATGCCCGTCTGAAGGCACATATTCAGCGTCTGAAAGCCGATTTTGCCGATACCGCCGATATCCAGTACCGCGCGCGCCAGCTCACCGAAGACATGGCCGTGGCGCTGCAGGCCAAGCTGCTGCTGGAGGCGGGCAACGCCACCGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGGGTCTATGGCACTCTGCCGCGAGGTGTCGATGTCGAGGCGTTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATTCTTGAGCGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTGATTTTTCCCTTTGGGAACAATTGGTTACGCTAAGT # Right flank : GTGGCATTGGGTGTAGGGCTTGAGGTCAGCGGGGGATGAAGAAATAAGCCTTGCCCCTGCCCTAACGTCCGAAGCACTTCGTGCTATGAGCGCGGCAGTCTGATGCACAAGGTCGTGGTCAATCCTGTGCCAGTGCTGCTTGTATAGAAATCGGCATGATTGTCGGGTGCTAGCTATGCTGGCACTTTGTTTCAGGTCGAGTCTCACGATGCCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGGCGATGGCTTCGGCCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTTGCCCATGAGCCTGCGAGCACGCTGGACTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTAGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAATGGCTCGAAGGGCGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112005-113681 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHQP01000007.1 Pseudomonas sp. o96-267 strain 297 NODE_7_length_174395_cov_36.5572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112005 29 96.6 32 ............................T TGGCGGAATTGGCGTGAGGGGGATTTGATTAC 112066 29 100.0 32 ............................. TTATTGCCTTCGCGACTATTTCAATACAGGCC 112127 29 100.0 32 ............................. TCCATGGTGATTTGCTGAGCCATGGCAATCTG 112188 29 100.0 32 ............................. CTGATGCTCGGAGTGGTTTTTGTACTTCGGGT 112249 29 100.0 32 ............................. GCCCGCCAGGCCGAGGCCCGGATCCAGGGCGA 112310 29 100.0 32 ............................. CCGCGTAATATCGGGGTTTAGCTTCCATTCTG 112371 29 100.0 32 ............................. GCTCATTGCAGGATCTCCAGAACTTCGGTGGT 112432 29 100.0 32 ............................. CTGTCGGATCTGTTTTTCGCGATCGGTGACGC 112493 29 100.0 32 ............................. GTGAATGCGGTGGAGATTCCCGAGATCTACCG 112554 29 100.0 32 ............................. ACACCGAGCACACCATCACCACCGCCTGCACC 112615 29 100.0 32 ............................. GCGGGCAATGATTTCGGCATGCAGCGACCGAT 112676 29 100.0 32 ............................. CCGAGGTAGGTGCCGACCATCAGGCCGATGAA 112737 29 100.0 32 ............................. ATCTCCCGCGACGAGATAGGCATCACCAGCCA 112798 29 100.0 32 ............................. AGCTTCGAGGCAGCAAGGAAGAAAACTCAGGA 112859 29 100.0 32 ............................. CAACAATCTCAGAAATGGGGCCGTAGTTAAGC 112920 29 100.0 32 ............................. CAATCGGCTGAATCGATCCACTTCTCGCCGAA 112981 29 100.0 32 ............................. CGTGTGGACGAAACCCGTGTCGACCTGCTCGG 113042 29 100.0 32 ............................. ACCATGTACGCCCAGTGCACCAACATGGCCTG 113103 29 100.0 32 ............................. CCATCCGCGCCGCCATGCCCGGCATGCTCGCC 113164 29 100.0 32 ............................. GCCCGGTCTGCCTCGGTGAGGTAGTTGGTGAG 113225 29 100.0 32 ............................. ATGTTCCCACCAGGCGCGCCAGTGGCAGTCCA 113286 29 100.0 32 ............................. TCTTTGCCGGCGCCGACTTGAATCTTGCCGCT 113347 29 100.0 32 ............................. GCAAAATCACGGGCGACGTAATCGCTAGCGCG 113408 29 100.0 32 ............................. CCCGGCTCATCGGCCACGGCATAAGCTCCCTC 113469 29 100.0 32 ............................. CCTTCGCGGCCTCGATGCGCGCCTTGATGACC 113530 29 100.0 33 ............................. CTGCGCCGCCAGGTTCTGGATCTGCGTGCGCAC 113592 29 100.0 32 ............................. GCGACTATGGCCCGCAGCGCCCAGCCTGGGTT 113653 29 82.8 0 ............T...A...A....G..A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATTCCCACCATCGAAGAGGTGCTGTCCGCTGGCGGCATCTCGCCGCCTGAAGCACCGCCGGAGTCAGTGCCACCGGCTATTCCCAATCCTGAAAGCATCGGCGACGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTCCCGCCGCGCCTGCGTGGGCGTATGGCCATCTGGCTGCTGGAGGTGCGTGCGGGTGTTTACATCGGCGACGTATCCAAACGCACCCGGGAAATGATCTGGGAGCAATTGAGCCAGGGACATGAAGACGGCAACGTGGTCATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAATCGCCGTTTGCCGGTGGACTTCGATGGCCTGAATCTGGTCGCCTTTCACCCCTTGGAAAACCCTGATCTTTAACAAAGAAAAGTTGGTAGATTTTTAGCGGCTGATTTTCCCCTTTAGGAACAGTTGGTTACGCTAAGG # Right flank : AAGCGCCACTCTGCGCGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACGTGATGCGGATGAAAAGGGAACAGGGTGCGGCGACTCTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGGAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGACAACGGGCGTTTCGCCCACCCTCTATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAGCAACGGTGGTGCCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //