Array 1 73940-75492 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTT01000004.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3307 NODE_4_length_244774_cov_4.91905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73940 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 74001 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 74062 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 74123 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 74184 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 74245 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 74306 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 74367 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 74428 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 74489 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 74550 29 100.0 32 ............................. TTTGTTTAAATAACGGAGACATGACCAATGAA 74611 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 74672 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 74733 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 74794 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 74855 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 74916 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 74977 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 75038 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 75099 29 100.0 32 ............................. CAAGACCGCAAAGAGGCGCTGAATCATGAAAA 75160 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 75221 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 75282 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 75343 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 75404 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 75465 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83625-84752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTT01000004.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3307 NODE_4_length_244774_cov_4.91905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83625 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 83686 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 83747 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 83808 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 83869 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 83930 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 83991 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 84052 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 84113 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 84174 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 84235 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 84296 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 84357 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 84418 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 84479 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 84540 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 84601 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 84662 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 84723 29 100.0 0 ............................. | A [84750] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //