Array 1 113447-113719 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJMM01000020.1 Pseudomonas aeruginosa strain GO34 NODE_20_length_113756_cov_31.144954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113447 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 113508 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 113569 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 113630 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 113691 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGGGCGAACGACGGCAGCGTCACCCAGGCGCAGTGTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-1042 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJMM01000007.1 Pseudomonas aeruginosa strain GO34 NODE_7_length_307322_cov_29.536467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 99 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 160 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 221 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 282 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 343 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 404 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 465 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 526 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 587 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 648 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 709 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 770 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 831 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 892 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 953 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 1014 28 79.3 0 A..........A..C..-.....A....T | C [1018] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : AACCGCGCGCTGTCCTCGGCCTGGACTGGACCATCGAG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10215-11953 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJMM01000007.1 Pseudomonas aeruginosa strain GO34 NODE_7_length_307322_cov_29.536467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10215 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 10276 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 10337 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 10399 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 10460 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 10521 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 10582 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 10643 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 10704 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 10765 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 10826 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 10887 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 10948 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 11009 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 11070 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 11131 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 11192 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 11254 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 11315 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 11376 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 11437 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 11498 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 11559 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 11620 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 11681 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 11742 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 11803 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 11864 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 11925 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //