Array 1 243-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWD01000079.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2887 NODE_79_length_18034_cov_3.90572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 181 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 120 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTCACAAATGCGAGGAGTCAGCCCAATGAGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWD01000420.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2887 NODE_420_length_227_cov_2.4125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 104 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 165 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATAAACCGGTCGTCTGGCATATGTGCGTAGCCACCTCGCAG # Right flank : AGAGATTGATTAAATGAACAGTAACAAACTAAGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4519-6259 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWD01000186.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2887 NODE_186_length_7647_cov_3.54485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4519 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 4580 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 4641 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 4702 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 4763 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 4824 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 4885 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 4946 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 5007 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 5068 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 5129 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 5191 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 5252 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 5313 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 5375 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 5436 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 5497 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 5558 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 5619 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 5680 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 5741 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 5802 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 5863 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 5924 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 5985 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 6046 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 6107 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 6169 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6230 29 96.6 0 A............................ | A [6256] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //