Array 1 94-855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZGD01000076.1 Streptococcus suis isolate GD-0070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94 36 100.0 30 .................................... CAATGACGATCTGAGCAACATCTGCCTGCT 160 36 100.0 30 .................................... TCACGAATTGAGCCAGTGCCAACAGCACCA 226 36 100.0 30 .................................... TTTAGAAAATGAAAAAGAAGAAACAGATGA 292 36 100.0 30 .................................... GGGAAGTCGTGTATATGACTTTTTCACACT 358 36 100.0 30 .................................... ATCAGTGTTTACTTGCTGAGAATATTCTAA 424 36 100.0 30 .................................... ATTGGTTGGGTCCCGATAAACAAATGATGT 490 36 100.0 30 .................................... AAAGAAGAAGACCAGGTTGCCATTGAGACC 556 36 100.0 30 .................................... TAATTATCTCTTTGGACCGCATCGTGGCCA 622 36 100.0 30 .................................... TAGTAACAAATAAAGAAGTAAAAGAGGAAA 688 36 100.0 30 .................................... CACTTCCTTACGCTACTAATTTTCAGTTAA 754 36 100.0 30 .................................... CTTCTGGTAGTTATCCCCATAACATTTGTA 820 35 83.3 0 .......................T..T.-....TCA | T [842] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : CTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCAGTGAGACCG # Right flank : ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 403-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZGD01000048.1 Streptococcus suis isolate GD-0070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 402 36 100.0 30 .................................... AATAAAACTGCCATACACTGACAATTACTG 336 36 100.0 30 .................................... GTTTAGTGGCGATATTATCTTCGGAAATTT 270 36 100.0 30 .................................... GAACTTTTTTAGCAAATTTCAAAAAAGTTT 204 36 100.0 30 .................................... TTGCAAAAGTTGCTAGCATACTAGGGTTCT 138 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : CAAAGAAGAAGACCAGGTTGCCATTGCAATGTCATTAAGTTAACTAACCTATCACGTTTTGTGGTGGGTTAGTTTTTATGTTACACTAAAAATAAAAGGGGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //