Array 1 130825-131510 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518766.1 Pseudomonas aeruginosa BL23 adgfb-supercont1.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 130825 27 100.0 33 ........................... TAACCCGTGGTGGACGTTCGGGCGGTCAAGGAA 130885 27 100.0 33 ........................... TAAGTCGGTCGATCAGGTGACTAATCTGCCCAG 130945 27 100.0 33 ........................... TGTGCTGAGCCAGCCAACCGATCTGCTGCTGCC 131005 27 100.0 34 ........................... TAGGAAGATGCCACTGCGCTGGCTGCCTTGGGTG 131066 27 100.0 33 ........................... GAGGCTGGCTGCCAAGGGCAAAGCTATCCATTC 131126 27 100.0 33 ........................... GTGCGATAGTCAGCGCACTGACGATTGCAAGCA 131186 27 92.6 31 ...........C.............G. CTGCGGAATCGTTGAAGACGGCTGCGAAACT 131244 27 85.2 33 .......A....A.G..C......... GTACGATCTCGGGAATTTGCGTATCTGGGATAC 131304 27 85.2 32 A...........C....C.....T... AACCAGTGGGGCATCGTCATCGGACGGCTTTT A [131326] 131364 27 88.9 33 ..A.........C...........T.. GCATAAGCAGGAAATGGGAGGTGAGCCCTGTTT 131424 27 74.1 33 ..A........C.....C..T...GGA AATAATCGACCGATCTAGGGGCAGACGGGCTAG 131484 27 85.2 0 .......C.T.......C..T...... | ========== ====== ====== ====== =========================== ================================== ================== 12 27 92.6 33 GTGTGCCGCCGTGTAGGTGGCTTGAAG # Left flank : TCAAAGACGCTTGCGTCATGCCGACAGCTTTTCGCAGTGCCGCGCTCGGCGACGACAGGGCCGAATTTAGGGCCAAGTGCATTGCTGTCTTCGATAAATACCGGGTTTTGGAAACCATGATCGAAACAATTAAGGACGCTTGTGATTGTCATCGCCGTTGATGAGAGCCAAAAGCGTTCGCTGAGGAGATCCAGGCGAGTGTTATCCAAATGGCTCAGCCAAATAGGCTCTCGCACATGGACTGGGAGCCTAAGCCAAGAGGGTATCCAGCAGATGCGCAGCGAGCTTGCAAAGGCAGCGAGTAAAACCAGTGCTGTGGCCGTTTTTGCTGTGCGATCAGGGCGCAGAATGACTCTTTTGTTCTTCTGTGGTGCTCGAACCGATTGGGATGAAAATGGCTGGTTTTCTCATAAATCTATCAGCGCAAAATGCCTCATTGATAGTGACTATTTATTGAAGCAAGTGATTGAAAAATAGAAAGTAATCGCGGATTTATAACA # Right flank : GGCGTATGTTTCGAGTAGCCCAATAAGCTCGAGTCAGCGCCGTTTTTTGGGGTTCAACAGTGTTGCGCGATAAGCCTCGCCCTTCAGGGCAGTGAGGATGTCAACGATACAAAGAATTACTGACCAATAAACACCGCTTCAACTGCCGCCAAGGCTTGGCGCGCGCCTTCAAGCTCCGGCTGAATCAGTTTTAACCCTCCCAGATCGTTGTTCATTACCGACACGCAATCTTGAAGCGCTTTTTGGGCTTCAGCGAGAGCAGCCAGCAGAGCTTCGTTTTTGCGATCCACAGCCGCTGGCGCTCCGTCTACTACGCTGAGGCGCTTGCTGAGAACGAAGTAGATGTGCGGGAACACCAACTCTGAGACAACGCCCGCGTTCTTCGCTGTTTTTGCTGACGCCTCTTCAACGATAGAGATCAGTTCTGCCTTGTGGATCGGGTTGAATAGCTGCATGTGGTGGCTCCCAGTGATTAATGCTCCCAGGATGCCGACCATCCC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGCCGTGTAGGTGGCTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 809254-810002 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518765.1 Pseudomonas aeruginosa BL23 adgfb-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 809254 28 100.0 32 ............................ CGCAACAAGCATGGAGAACAGCATCAATTCGC 809314 28 100.0 32 ............................ TCGGCCCGTCCAGAACGTCACACGCTCGCCAT 809374 28 100.0 32 ............................ TTTGTCTCGATGATCATTTTGACGCGGCGCTC 809434 28 100.0 32 ............................ ATCACGGCCACCCGAACACGTCGCCCAGGAAC 809494 28 100.0 32 ............................ AGTGCCACCACCCGTTCCGCCGCCATCACCAT 809554 28 100.0 32 ............................ GAAGAACACGCTGGCCGGTGAGTTCTCCGGGC 809614 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 809675 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 809735 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 809795 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 809855 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 809915 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 809975 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //