Array 1 94677-96473 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYR01000010.1 Salmonella enterica subsp. enterica serovar Hadar str. 2012K-0272 NODE_11_length_270997_cov_42.172504, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94677 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 94738 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 94799 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 94860 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 94921 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 94982 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 95043 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 95104 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 95165 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 95226 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95287 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95348 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 95409 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 95470 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 95531 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 95592 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 95653 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95714 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95775 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95836 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95897 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95958 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96019 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96080 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96141 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96202 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96263 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96324 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 96385 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 96446 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113155-114894 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYR01000010.1 Salmonella enterica subsp. enterica serovar Hadar str. 2012K-0272 NODE_11_length_270997_cov_42.172504, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113155 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 113216 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 113277 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 113338 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 113399 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 113460 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 113521 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 113582 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 113643 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 113704 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 113765 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 113826 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 113887 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 113948 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 114009 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 114070 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 114131 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 114192 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 114254 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 114316 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 114377 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 114438 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 114499 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 114560 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 114621 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 114682 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 114743 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 114804 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 114865 29 100.0 0 ............................. | A [114892] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //