Array 1 3078155-3076617 **** Predicted by CRISPRDetect 2.4 *** >NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3078154 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3078093 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078032 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3077971 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3077910 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3077848 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3077787 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3077726 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3077665 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3077604 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3077543 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3077482 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3077421 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3077360 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3077299 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3077238 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3077177 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3077115 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3077012 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3076951 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3076890 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3076829 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3076768 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3076707 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3076646 29 96.6 0 A............................ | A [3076619] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3096268-3094287 **** Predicted by CRISPRDetect 2.4 *** >NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3096267 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3096206 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3096145 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3096084 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3096023 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3095962 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3095901 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3095840 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3095779 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3095718 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3095657 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3095596 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3095535 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3095474 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3095413 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3095352 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3095291 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3095230 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3095169 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3095108 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3095047 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3094986 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3094925 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3094864 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3094802 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3094741 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3094680 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3094619 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3094558 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3094497 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3094436 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3094375 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3094314 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //