Array 1 129947-128855 **** Predicted by CRISPRDetect 2.4 *** >NZ_AICQ01000008.1 Streptococcus constellatus subsp. constellatus SK53 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 129946 36 100.0 30 .................................... AAATGTAATATCGCTACTACAAATGACTGT 129880 36 100.0 30 .................................... CTTTGATTACATTTTGAAGGCGCAAAATAA 129814 36 100.0 30 .................................... TGCTCTATATCTTGAGCAAGCCGGATGACT 129748 36 100.0 30 .................................... TTCATGTTGATAATTACTTCGACGATGTTT 129682 36 100.0 30 .................................... TAAAACGAAACCATGCAAATATCCTTATTC 129616 36 100.0 30 .................................... AGCAAGTCTTGCCAACCATTGGCTACCCTA 129550 36 100.0 30 .................................... GGTTGGATGTGGACTTGGTCAATGGACTGG 129484 36 100.0 30 .................................... AACATTGCAAGAAATCTTAAAAGAGATGAC 129418 36 100.0 30 .................................... TGGTGATGGCTCTGGAGCTAAGTCACGCTT 129352 36 100.0 30 .................................... TTCAGTAAATGAAGATTCTATAAAATCTTC 129286 36 100.0 30 .................................... CTTACGTAGACGGTATTTCTTCGCATTTAT 129220 36 100.0 30 .................................... AAAGCTCCAGCAATGATTGTCTTTCACGCT 129154 36 100.0 30 .................................... ATTTATCGTTATCGGTATGATAGCAGGCTA 129088 36 100.0 30 .................................... CGTCCTGTGCAACTCTATGCTCTTAACTGA 129022 36 100.0 30 .................................... TGGTGGTAAAGGAAAATCTTCATCTTTTCG 128956 36 100.0 30 .................................... ATGAAACATCACTAGCATCTGGCGGTACAA 128890 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTGAGTGATACTGTTTTTGAGAAAAGTTTAGAGGTTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTGTCATGTTATCTGTCTGAACATAAACTAGCTAAATTGGTGGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTATGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : TAACCTATTCTTTTCTTCCAAATTCCCAAAATTCCCAAAAATTCAGACACAAACCATCTGATTGTAAAGCTTGCAAATTTTTTTAATCGTGCTATAATATTTCTTAGAGACATACCGCTGGTTGGAATTTTTTAGAGAGCGCGTGGGGCTGGAAAGCGTGTAGAGGAAGGCAGTTGGGACTACTCTAAAGTAACTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAGTTTTTGTTGTACATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTATGGATGCCGCTTTTTATTTTGTCAGAAGGAGGAAGAATGATGCTTTATATGATTGGCGGATCGCCTTGCAGCGGGAAGTCAACAATTGCTTCACTTCTTGCTAGACAGTATCAGCTGCTTCATATCAAGCTGGATAATTTGGTGGACGAGATGATGAGTCAAGCAAGTGTAGATTCACAGCCGATTTGCCTTCTTAGACAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 51167-49880 **** Predicted by CRISPRDetect 2.4 *** >NZ_AICQ01000018.1 Streptococcus constellatus subsp. constellatus SK53 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 51166 32 100.0 34 ................................ AGGAACGGCCACTCGACGTTGGCCCATTTTGACT 51100 32 100.0 35 ................................ GTTGCATAAAAGCTGTTATTACCTGTCAAATCCAG 51033 32 100.0 34 ................................ ATGGACGAAAATGGCGACAAGTTACTAGCTAAGA 50967 32 100.0 33 ................................ TCTAGCAAATATAGCCCATGGCAGTCTGACTTT 50902 32 100.0 33 ................................ CAAAATGCTTGTGAGTGCACCTTGCATCAATTT 50837 32 100.0 34 ................................ ATCGATAAAACGTTTTTGCCAATCTTCCATTTTT 50771 32 100.0 34 ................................ ACTCATGGATTGGGATAGCGACAACGTGATTACA 50705 32 100.0 33 ................................ TACAAACAAAAATTAAAGAAAACAGTCTACACA 50640 32 100.0 34 ................................ AGACAAGAGGAGCCTTAAACAATGCGCATGATGT 50574 32 100.0 34 ................................ ATAAAGCTAGTGTGTACGATGTGATTGAGTTATT 50508 32 100.0 34 ................................ TTCGACATTTAATCACTCCCCGTAAATAGCAACA 50442 32 100.0 34 ................................ AGACCTGTATAGCTCGTTTGAAATGATGTATTTC 50376 32 100.0 34 ................................ TATTTCCAAACTCTGTTATTTTACTAAAAAATGT 50310 32 96.9 34 ........T....................... AATAAAAGTTTTGGAAAAACTATCTTTAAATTTA 50244 32 100.0 34 ................................ ATCTTGATTGGATATTAAATTTAAAGACCGATTT 50178 32 100.0 36 ................................ ATTAAAAATATCTATTTTTTGTAACGTTGGATTTTT 50110 32 100.0 35 ................................ AAAATTTGCGAAAATGCTTGCCTTTATCGGCGAAG 50043 32 100.0 35 ................................ TGAAATAATAAAATAAATATCTTGTTTTTTCAAAG 49976 32 100.0 33 ................................ CGGATCGCCTAGCTCATAAACTCCCGCTGCTGA 49911 32 87.5 0 ......................AA...A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.2 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CAAAGCAATTCGTGGAGAATTAGAATCCTATCCGCCATTTTTAATCTAGGAGTAAATTTATGATGGTTTTAGTAACTTATGATGTCAATACGGAAACTTCCGCAGGCAGGAAACGTCTGAGGCATGTCGCAAAACTTTGTGTTGATTATGGTCAGCGTGTGCAAAATTCCGTTTTTGAATGCTCAGTAACTCCGGCTGAATTTGTAGAAATAAAAAATAAACTGTTGACAATCATTGACCAAGAATCAGATAGTATACGATTTTACTTGCTTGGTAAAAATTGGCAAAATCGTGTAGAAACCCTTGGTCGAAATGACAGTTATGACCCTGATGTCGGGATATTACTTTTATAAAAACTTGTGTGCGAACCTAGGTTGCACATCAAAACCTAGGACATTCGCGCATAAAAACAGAATGATAGTGGCAAAAATCCAGTTTTTATTAAATGAAATAGCTCAATAGATTCTTAGATATAGTCACAAACGGTGCAACCATGCGCT # Right flank : ACACCTAAACTCTTGTTTGCTTTCAAAAACATGCTAAATTTTTCCGAGATATCTTGGCTTTGGATGATGCCAAAATTTTGCAGAAATGTCTCGAGTTTTTGACTGCATTTTGCGAAACTCTCTTACTTGATGGAGAAAATGACCTGTCTAGTGAGGAACTGTACCAAAAATTAGGTTTGGATAAATAGCGGAGTAAACTAACATCTGAGGACAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTACCTGAAATAATAAAGTTCCCTATATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAACAGCTCAATAGTAAAGCTGTTTTTTTTACCTATTTGAAAGTTTAAAATTGTGATTGGTCTTGTATTTACGGATGATTAGACGTTTAAACTTCAACATTATAAAGATCTGTTGATAAATAGCGTTCGCCATTATCTGGAGCAAGAGCTAGAATTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //