Array 1 9108-9343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKI01000044.1 Enterococcus columbae DSM 7374 = ATCC 51263 strain DSM 7374 Scaffold44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9108 32 100.0 36 ................................ AATAATATCTGTTACTTTGTCAAAATCGACATAAAC 9176 32 100.0 36 ................................ TAATTATAGTTCGATAAGTTAACTTGTCTTGACTAA 9244 32 100.0 36 ................................ CATAATATCTGTTACTTTGTCAAAATCGACATAAAC 9312 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 36 GTCTCACCTTACACAGGTGAGTGGATTGAAAT # Left flank : AACTACTTGCTAAAACAATTCGTGGCGACCTTAAAGAATATCCACCTTTTCTTATATAGTTGGGTGATGTTAAAATGATGGTATTAATTACTTACGATGTAAATACTGAAGATAGGCATGGACGAAAACGATTAAGAAAAGTTGCAGAATTATGTGTAGATTATGGACAAAGAGTTCAAAATTCTGTTTTCGAATGTTCGTTGACTCCTGCTGAATATGTGGAAATTAAAGAAAAATTGTTTGAAATAATTGATAAATCAACAGATAGTATCCGATTTTATAATTTGGGAAAAAATTGGCAACACAGGGTTGAAAAAATGGGGTTTGATGATACCTATGATCCAGATAAGGATTTGTTGATTTTTTGATTTGAGCGAACCTATAGTGCACATAAAAACATGTATAGGTTCGCCCAAAATTTGTTGTTTATTTGAATGTTTTAGCACTTTTTGTAATAATTTTTTATTCAAAAAATGGTATAAACTGTGCTGTATCGCGCA # Right flank : TAATTATAGTTCGATAAGTTAACTTGTCTTGACTAAGTCTCACCTTACACAGGTGAGTGGATTG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTTACACAGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 63-297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKI01000031.1 Enterococcus columbae DSM 7374 = ATCC 51263 strain DSM 7374 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 63 32 100.0 35 ................................ TCTCAGTATTATTCTTGAAAGACTAACAAAGCAAG 130 32 100.0 35 ................................ GTTTAATTTAGTAGATAATTTGATGGAGCCGTACC 197 32 96.9 37 ...........T.................... TCCTGCTTACCCGGCAGTTCGGTAATTTTGTGTATTA 266 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 98.4 36 GTCTCACCTTACACAGGTGAGTGGATTGAAAT # Left flank : CCTTACACAGGTGAGTGGATTGAAATAAAAATGATGTTGTAAGTTATGTGACACGTAGTCCAG # Right flank : TAATGGTGTTTTTGTGAGAGTATGATGAAGTTTTTTTGCTTAATAAAACAAAATTCTGTTTTTGTACCCTTAAGATTTAGATATCAAACATTCAAATGAATAAATTAGCTTTTTGGTCAGATAGGAGAAGTATTTGTGAGAAAAAATGATAGCTTGAAAATATATTTTGGCAAAGTGCTTATTTTTATTTTTGACAGCATGATGGTTTTCTTTGATTGTGTGGCTTATATATCGACTCTACTTGTTGCCGTCTTAGAAAGTCTTTCTAAATTCATTCGTTATTCTATGTGTAAACAATCCACTCAGCAAGTAACAGGGCTAATTAAAGGTTCTGCAAATTATATCTACCATACGCCAGATTCAAAGTATTATCATAAAATTACGCAGCCGATAGCCTGGTTTGCTACGGAGGCAGAAGCTGAAAAAGCAGGATTTAGAGCTTGTAAACAGTAAGAAAGATTAAAGCTTGTAAACAATAAAAAAAGTTGCCAAGATTATTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTTACACAGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 60560-64738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKI01000005.1 Enterococcus columbae DSM 7374 = ATCC 51263 strain DSM 7374 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 60560 36 100.0 30 .................................... AGGCGATTCAGACGAAGGGTACTTACGTTT 60626 36 100.0 30 .................................... ATAATTGGTCGATCAGCGTCGGAAATACCT 60692 36 100.0 29 .................................... AACAGCAAGACAGATACTTATCATCCACA 60757 36 100.0 30 .................................... TTAAAGAGCTTGCGCTAAACCACAAATATA 60823 36 100.0 30 .................................... TTAACTTGCGTTGAAACTCCAAACAATTAT 60889 36 100.0 30 .................................... GCTAGTAGGCTTTTTCTTATCGAATCATTT 60955 36 100.0 30 .................................... AAAATTGGTCGATCAGCGTCGGAAATACCT 61021 36 100.0 29 .................................... AACAGCAAGACAGATACTTATCATCCACA 61086 36 100.0 30 .................................... TTAAAGAGCTTGCGCTAAACCACAAATATA 61152 36 100.0 30 .................................... TTAACTTGCGTTGAAACTCCAAACAATTAT 61218 36 100.0 30 .................................... GCTAGTAGGCTTTTTCTTATCGAATCATTT 61284 36 100.0 29 .................................... AAATTGGACTCGCTAAATGCGAACGCGTT 61349 36 100.0 30 .................................... GACACCGTTAATTAAAATGTACGTTGATTA 61415 36 100.0 30 .................................... AGTTAAACTCCAACCCAATCAACTCAATCC 61481 36 100.0 29 .................................... AAATTGGACTCGCTAAATGCGAACGCGTT 61546 36 100.0 30 .................................... GACACCGTTAATTAAAATGTACGTTGATTA 61612 36 100.0 30 .................................... AGTTAAACTCCAACCCAATCAACTCAATCC 61678 36 100.0 30 .................................... CTAGCTTTTCTTCCAATGCACGCAAGGCGT 61744 36 100.0 30 .................................... AGTACATCAATTTCCAAATGTAGTTTATAA 61810 36 100.0 30 .................................... AAAACGACATTCGATGAACATTTGACGGTG 61876 36 100.0 31 .................................... ATTATGTTTGAATGCATTTGGCATGATGGTC 61943 36 100.0 30 .................................... TTCCATTGGTCCTTTAATATCCAAGCAAAT 62009 36 100.0 30 .................................... CGATTGCTGCAGCTGTCTCCTCCATGCTAA 62075 36 100.0 30 .................................... ACGTACACAAACGATTTACTAGTTGATAGC 62141 36 100.0 30 .................................... AATGGCGAATTAGGAGACACACGCGTGAAC 62207 36 100.0 29 .................................... TAAAAGGCGATAGTTAAGCCCGTCTTGCT 62272 36 100.0 30 .................................... GCCTTTAAACCATTATGTCACGCATCAAGA 62338 36 100.0 30 .................................... TTTAACACCTTCTCAGCATAAGGTACTAAT 62404 36 100.0 30 .................................... CAGATGGAAATCAATTCATTTCCTGTTTCT 62470 36 100.0 30 .................................... TTGTAACTCATTGCGATTGGTTAATCCGGC 62536 36 100.0 30 .................................... CGTGTTTTCTCTCCAACGCTTCGACATCTT 62602 36 100.0 30 .................................... AGATTTAGGGACTGCGTTAGATCCTTACTC 62668 36 100.0 29 .................................... CAAAGAGGGAGTGGGGCTGCCGACTCGCA 62733 36 100.0 30 .................................... CAGTTAAATCTCTCAATGTAATTTCACTCA 62799 36 100.0 30 .................................... AAATTCCGCTGTTAAATCGTTCATTTTAAT 62865 36 100.0 29 .................................... TCTTGCGATGGTCAACAATTAAATCGTTT 62930 36 100.0 30 .................................... TGTAAAATACAACCGCAGCAATGACTAAAA 62996 36 100.0 29 .................................... CAACAGTTCGTTTGATGGTCGAAACATCT 63061 36 100.0 29 .................................... AAAACTCGAAAGAATGATGGATAATGCGA 63126 36 100.0 30 .................................... ATCGCTTTACGCCGAGCCGAGTTAAGCTAT 63192 36 100.0 30 .................................... CACATAGTCCTTACCAAAGTTGACAATCCC 63258 36 100.0 30 .................................... TAACGATTCTGAGATTTGTCATCGCTTGGA 63324 36 100.0 30 .................................... TGGAATGTGACAATTATTGTATCTTTTTGT 63390 36 100.0 29 .................................... TTGTAGGAAACGGACAAGTGATTCAAACA 63455 36 100.0 30 .................................... AGGTGTGACCACTTTTACCTTTGCCTGGGT 63521 36 100.0 30 .................................... ATAATTTTAAATTATCAATAATCATCATTT 63587 36 100.0 30 .................................... TTTGCCGTTACCGACTTCTAAATCTCCTTT 63653 36 100.0 30 .................................... GCTAGTACGTACAAGGCTATCTATGATTAT 63719 36 100.0 30 .................................... CATAATCGTAGAAAGGGAACGCGATATATT 63785 36 100.0 30 .................................... AAATTCTATCGCACTACCGGTCAACCGGCT 63851 36 100.0 30 .................................... GTAAACTTGTGTAGATAGCTGAGTGCATTA 63917 36 100.0 29 .................................... CAAAACGATATTTTTAGCCAATTCCACAA 63982 36 100.0 30 .................................... ACTTGACTACGCAGAGAGGTTAACTGGGGT 64048 36 100.0 30 .................................... ATGTGGGATGAGGATAGTGTATTGAATGAT 64114 36 100.0 30 .................................... GCTGATGGCCGTTATAATGATTGCCACACC 64180 36 100.0 30 .................................... CTCTAACTTCTTCCGTCGCTTTTTCTCTCA 64246 36 100.0 29 .................................... TCAATATTGACCTCACTAAATGTCTTATC 64311 36 100.0 30 .................................... CAACAATAAAGCGCTGGCCCTTAAAAGCCA 64377 36 100.0 29 .................................... ATAAAGAGGGCGAAAAAGACAAGACCAAA 64442 36 100.0 30 .................................... TGTCTGTAATGTGCAGGAAGAATCATGTTT 64508 36 100.0 30 .................................... TTTTAATCAATCGCAGCTACATATCTGCGT 64574 36 100.0 29 .................................... AATTTCAACGATGATTCCTTTAATAACTT 64639 36 100.0 30 .................................... CTAATTCTTTTTCTTTGTAGTTGTATGATT 64705 34 86.1 0 ..........................--.T..T.C. | ========== ====== ====== ====== ==================================== =============================== ================== 64 36 99.8 30 GTTTGAGAATGATGTAAATCAATATAGGTCTTAATC # Left flank : TTTATCAGTGAACTATTCAAAGAAATAAAAGATATTGTACAATTTGGTGAATTGTATGAGAAGTATGTATCTGTGAAATCAGAGTTAGTACAGTTGATGGAGAGAATCTCTGAATGCAATGATTATCCCCTTCAATATAGTGAAGAATTTGAGCTAACCAGTTTATTAAAATTAATGAAAGTTGAGTTTGATTTTCAAGATACAGATTATTTTGAAAGGTTACTTACATTTATACAATTGTCTCAGAGATTACTTCAAAAAAAATTATTGATATTTGTCAATTTATCGAGTATTTTATCTGAAAGCCAATTGGTAGAACTTGAAAAAATTGCAAAATATGAGGAAATAAAAATTTTGATGGTGAATAGTTATCAGATAAACTATTCATTTCCGTATAAATGGTATATTATGGATGTAGATGGCTCTGAAATTTTTTAGAGCCATCTGGTTAAGATTTATGTTGATCGATGTGTGATGGCATCTTCATTTTTGAATTTGAG # Right flank : CGATAAAAAATATATTGGATAAATAAAGCTTATATAAACCAATATCAAAATGACTGAATAGTACAATAGAGCTATTAATTCGCGAAAATATATAGTTTCCATTGTCTAAAGTAGTAGATACAGTTAAATGCGTGGTACCTTTTTCTAGAAATAAAAAGGGTGATGGATATGAAATTTAAAATGATGATAGCTTTAGTTGAGGATTTCCTTCATAATACTCCAGAAGATATTTTCGATTTTTCGATAACCTTAGAAGATGTGTTGGTTGATGATTATGAAGAAATGTATTCTGAACAACCAGAAGCAGTTTATTATTTAAGTCGAGAAGTTCCAGAGATATGTTCTGAAGTGGAGCCAGGAATGAGTATAGAAGAGATTGAATTGTTTAAAGAAAAGTTATCTGCTGAATTTGAAAAAGCGAAAAAACTAATTGTCCAATAAATATTTGCGAAGTTTTATTTGTCCAAATAAATGGTGGTTCCTTATATGAATAGGCCGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAATCAATATAGGTCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //