Array 1 152901-154785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWW01000006.1 Streptococcus thermophilus strain St1-GS-2 St1-GS-2_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 152901 36 100.0 30 .................................... CTGACGTTCTAGTTCAGCAGCATCAGCGAT 152967 36 100.0 30 .................................... TTCAGTTTGGCTTTTTATTTTAAAAAACAT 153033 36 100.0 30 .................................... GAAAATCGCTAAAGAAGCAGTTAAGAAGTT 153099 36 100.0 30 .................................... TGTGGCGCTGTCCTATGACCGTACTGGTCT 153165 36 100.0 30 .................................... GTTGACAGTTAAATATAGCTTTACAGGAAA 153231 36 100.0 30 .................................... GTCTTCTAATACAGAAACACGTTGTTGACT 153297 36 100.0 30 .................................... CCCATGACATCAAGATGATATCCCCTGTCA 153363 36 100.0 30 .................................... AATGAAGAAGCCAATTCAAGCGCAAGGGTC 153429 36 100.0 30 .................................... CGAAATAGACGCTTTAAGCATAATGGAAGT 153495 36 100.0 30 .................................... GCTCTTGGCTCAGCTCACAAAAGAATAGTT 153561 36 100.0 30 .................................... CTCTAGCACGCTAGTATGATCGTAATGACC 153627 36 100.0 30 .................................... TATAGAATACAAGAAGATTAAAACAGTACT 153693 36 100.0 30 .................................... TGAGATTGGTGCCTTAACACAAGATAAATT 153759 36 100.0 30 .................................... AACTACTTAGGAACAGTAGCGAGGGAGATT 153825 36 100.0 31 .................................... CCTTAAATGCCAACGGAATCCTTAAGATTAA 153892 36 100.0 30 .................................... CTTCGGTGTACACGCTCATTTCAATGGTTC 153958 36 100.0 30 .................................... CTAAAGAGCTTCTACACGTAGCTAGCAAGT 154024 36 100.0 30 .................................... CTTTCCAAACGTTACGATTTGATGTTGGAT 154090 36 100.0 30 .................................... AGCTATCTCCATTAGTTCTTGACGTCCCTT 154156 36 100.0 30 .................................... TCTTTTTCAGCAAACCATTTCTTAACACCT 154222 36 100.0 30 .................................... TGAAGAAATAGTCATGATGAACCCAGTTAG 154288 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 154354 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 154420 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 154486 36 100.0 30 .................................... TTATATTTTTTTAAGGCGGTCAGTTTGGTC 154552 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 154618 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 154684 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 154750 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 103862-102572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWW01000001.1 Streptococcus thermophilus strain St1-GS-2 St1-GS-2_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 103861 36 100.0 30 .................................... CAGCACTAGCCGCAAGCCCTTGTATATTAA 103795 36 100.0 30 .................................... TAGAAATCAAGGAACTTGGATGAAAAGTAA 103729 36 100.0 30 .................................... ATATGAAAGGGAAATGATATGAAGAATGAA 103663 36 100.0 31 .................................... TTTTGGGATACAACACGCAGTCGTTGACTTG 103596 36 100.0 30 .................................... GTTTGAGATGCCAATGTTTTTCAATCCTTG 103530 36 100.0 30 .................................... GTATCAAAAGACGCATTCATGAAGCGAGCT 103464 36 100.0 30 .................................... AAAAACAATTGAAATTCATAATCAGCGCTT 103398 36 100.0 29 .................................... GCTTTTAACGTTTTAAGAGAATACCCTCT 103333 36 100.0 30 .................................... GTGACGCTGCAATGACTTGCCATAGTAATT 103267 36 100.0 30 .................................... ATACTGGTATATAGTAATTCATACTTCATC 103201 36 100.0 30 .................................... TTGGTTTCATATTTACTCCTTTGTGTTTTG 103135 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 103069 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 103003 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 102937 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 102871 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 102805 36 100.0 30 .................................... ATTCATTAATATCTGCAAGGATGTCTTGTT 102739 36 100.0 30 .................................... GAGAAAGTAGCCCATTCGGCCCATTCGGGG 102673 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 102607 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWW01000045.1 Streptococcus thermophilus strain St1-GS-2 St1-GS-2_contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 19 52.8 30 -----------------................... AGTAGAGAGACCAGCACACTACTGTACTAC 50 36 100.0 30 .................................... CTTCGCACGAAAGTTTATTAGACAACTCGC 116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 84.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : | # Right flank : TGATAGAGCTAGAATTGTCTTTTTTACCGAGTTTTTGTACTCTCAAGAT # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.21, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-A/C [Matched known repeat from this family], //