Array 1 58710-59275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000015.1 Alkalihalobacillus clausii strain 7529 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 58710 32 100.0 34 ................................ GTTGCCGTCAATATCGTGTTCAAGGCAGGCAACT 58776 32 100.0 35 ................................ CAGGTAAATAAACACGTCCTCAGCTACTAGCGGCT 58843 32 100.0 36 ................................ AAATTAGTCGTGTGAAAAATGTCGATGGCGTGAAGA 58911 32 100.0 35 ................................ AAGAACGAATATTAGCCAATTCAAAAACCTAGATC 58978 32 100.0 35 ................................ AAAAGAACCACGTATTTCATACGTCATCCCTGTGG 59045 32 100.0 33 ................................ TTTGTCCAATACCTGCTCAGTTTCGTTTTCCGC 59110 32 100.0 35 ................................ CATATATCCAGCCTCGTGAAAGCAGGCGTGTAACA 59177 32 96.9 36 .............C.................. GACAATTACAAGGTTATGGACTTTGATCCGCTCGAA 59245 31 71.9 0 ...........CA.......ACAC.-....GA | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTCTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGTCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATTCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : AGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAACGTTTTGGCTGTTTTTTTATTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCATTAGAGGATTCGTTAACCACTTTAGAAAGCGACCAAAAAATCGATGTGGTGACAAGGATT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9900-10662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000057.1 Alkalihalobacillus clausii strain 7529 contig00057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9900 32 100.0 33 ................................ TAGCAGCCCTGTGCTGCCTTTTGTTTTTCATAA 9965 32 100.0 35 ................................ CGTATTGGCGGGGTGGAAGAAGACAACGGAGACAA 10032 32 100.0 34 ................................ CTCGCGCTGATGGAGGCGGGCGGCGACTCACTAC 10098 32 100.0 33 ................................ CATGATTCAGACGATGATAGCGTTCCCGTGCAC 10163 32 100.0 36 ................................ CGTAATTTAAGCGTCACGTCGCCATCCTTGGCCGCG 10231 32 100.0 35 ................................ CTGAATTATGCGCTAATGGAATAGAAGACGGTACC 10298 32 96.9 34 ........................G....... GTGGGTCTTGACTACTGTATCATTCGAAAAGCTG 10364 32 96.9 35 ........................G....... TCGACGAGACACCGCATGTCTTACGTCTTATTATG 10431 32 96.9 34 ........................G....... AAAACGCGGTTTTAAGACTAAAGCAGAAGCCAAA 10497 32 96.9 35 ........................G....... TTTTGTGGCGAACGTGCTGCGTATTTCATACGTCA 10564 32 96.9 35 ........................G....... CCTTTTATAAGTCTTGAAGGATTTTGGATCGATGT 10631 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.7 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTGCAAAATTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAGTTAACATCATTAAAACTTGAACTAAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTATCGATTAGGAAACAACTATAAATCGAAAGTGGAGCACATTGGTGCAAAACCGACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGGACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATTAAAATATGTGTTAACGTGTATTAATTTGAAGAAAGATGTTATTGGTTTTAAAGGATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : TTTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATGGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTATCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTATCTCTGCTTTAAAAAGATTGGGAACTTCTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11422-11923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000057.1 Alkalihalobacillus clausii strain 7529 contig00057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 11422 32 100.0 37 ................................ TCGTAGGTTTTTCACAGTGGATTTAATTCCCGCTTGT 11491 32 100.0 39 ................................ ATGGAACGCTATTAAAGATATATGGAACCGAGTCTGGGG 11562 32 100.0 35 ................................ GTATTTGAGGACGATGAAGCTCGGCGACGAGCACG 11629 32 100.0 34 ................................ TGCTGGCCGAACAAGTGTCTCTAATGCCAGCCGA 11695 32 100.0 34 ................................ TGTTACGAGGGGCGCTAACCCTCTCCGGACTTTC 11761 32 100.0 34 ................................ GGAGGAGGCAAGTAAAAACAATATTCACACTTAC 11827 32 100.0 33 ................................ TCTGTCCCCTCTAAACAATAATCAATTAATTGA 11892 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 8 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTATCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTATCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGTGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAAATTCGCT # Right flank : AA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7692-8588 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000051.1 Alkalihalobacillus clausii strain 7529 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================= ================== 7692 32 100.0 33 ................................ TTTAAAAATGGGATTTCGTTTGTTAGAATTTCC 7757 32 100.0 34 ................................ ATGTCAGACATGGCCTGATTGGCAAGCGTATATC 7823 32 100.0 35 ................................ CAAATACTTTGCGAGTTCAACGCCGTCGTCTACGC 7890 32 100.0 36 ................................ TTTGGGCTCCTAATAACGTTTTATACATATTCTCAC CT [7900] 7960 32 100.0 33 ................................ GATCATCGTTTCCCCTCCTATCTATAATCCGCA 8025 32 100.0 35 ................................ TGAAATTGCGCCCTCCTGCGTAAACAGTGGGGCAA 8092 32 96.9 34 ..........T..................... GATTTGATTTCGAGGCCAACTCGTATTACTTCGC 8158 32 96.9 34 ..........T..................... CAGTACGCCCACAACGACGCCGCGCCCAAGAACG 8224 32 96.9 35 ..........T..................... GTCCGACTTGTCTTTTTTATCTACGTCCGCCTGCA 8291 32 96.9 33 ..........T..................... ATTTATGTGCTTAATACTTAATGTTTTATCTTC 8356 32 96.9 34 ..........T..................... CCCATAATCGTGTCTTTAGCATCGCCATATAGTG 8422 32 87.5 103 .............C........C.......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAAGTCACACGTGTGTAAGTAGTAGAGTCAAATAACAGTTTCTCTGGCCCCCACTCTTTTTCACGCAAAAAC 8557 31 78.1 0 ............T........AC..-...TCA | T [8568] ========== ====== ====== ====== ================================ ======================================================================================================= ================== 13 32 96.2 40 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAATAGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAATCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGTTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 8.34 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.49, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22270-23298 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000051.1 Alkalihalobacillus clausii strain 7529 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22270 32 100.0 35 ................................ CGCTGGCATCAGGATGACCAGAAGCTCCGTCTCTA 22337 32 100.0 34 ................................ TTCTACGTCAGCCAACGCTTCATCGCGCCTTTGT 22403 32 100.0 34 ................................ GTCAACATAGACGACCAACCGTTATCTAAGCGCC 22469 32 100.0 36 ................................ TCCTTGTGGAAACCGTCCTTGACGCCAGAGGCGAAG 22537 32 100.0 34 ................................ ATAAGAGAACGGGCGAGAGGGTTGCGTCTCTCGC 22603 32 100.0 36 ................................ GGGGAATTGCGCGATATTAATTGGGATAGGCATGAA 22671 32 100.0 34 ................................ ATGTTGGTGGAGGCTATTACGAGCTGCCAAACGG 22737 32 100.0 33 ................................ TAGGGTCTCGGAAGCCCTAGCGTAAGATACACG 22802 32 100.0 35 ................................ TTTGCCAATTCGTTCGTCCTCCGCTTTGACTAGGG 22869 32 100.0 33 ................................ ATCAAAGCCGCGTAGTTTTTCCATAATAACTGG 22934 32 100.0 35 ................................ TTGTAAGGCATTACGTTCGTCCGCAAATTTTAACG 23001 32 100.0 33 ................................ AGAGCTAATATTTTGCATGGGACCGAAACTAGA 23066 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 23133 32 100.0 35 ................................ GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 23200 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 23267 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.4 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATATGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGCCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATACAATACGGTGGAACGATCCTTAAAGGCAACCGATTCTTGATTTCTTCAATAAGCACTCGCCGATGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTATAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAGATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCAAAAGACTTAAAAGAACAAAAAAATTATACTGCCGGAATCACAGAGGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGTACAAGATATCAAGGAATTAAAAGAAGATCAGCTCATAATTAAGCAAGCGGTGCTTGAAACAAATCGAAGTGTAAAGAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000060.1 Alkalihalobacillus clausii strain 7529 contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33 32 100.0 34 ................................ GACTTGCCGGAATTAGACAAGCGTAAAACTAAAG 99 32 93.8 35 ..............................TA TATATCGCTTTGTTTGTTAACCTTGTGGGGTTGAT 166 32 100.0 35 ................................ CGGTTAAGATCGGAACTGTTGAGCTGTGGTTTGAT 233 32 96.9 35 ..............A................. GCCCTAATGTAGGCTCGCCATTTACCGGATCTTTT 300 32 90.6 0 ...........C.....C.......C...... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.3 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAACAAAGCGAAGTCGATGCTAAAGAAGCTGAG # Right flank : TAGAAAGAAATCCACCAATCGATCATTTGTAGAAAAAGTCACCCTCGTTGGGTAGGCGTAGATTGAAGACGTCTCCTTCCATTTCACCTTTGAAGTTGCATTTCGAGAAAGTCGTCATACTTATTGCTTTGAGCGGATGGTTTCAACATCCGCTCTTTTGCGTGAATCCTTTTTTAACTCAAGGGACTTCTTTGACAAGCGTCTTCTTAGAAAGTCATAGCGATATGAACCAAGGCAATTACAAATGATTACCAACGAGAAAACGATTATGATGCATGTTCTAGTTTCTGAAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTTCAATCAATCTAAAAAACCCCTTAAAAAAACACCACCAGATCTTAATGCAACAGGAATATTTACACCCTTACATAACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGGCCGGTCTG # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10028-10661 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000060.1 Alkalihalobacillus clausii strain 7529 contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10028 32 100.0 36 ................................ ACTGGAGACTGGAGTCAGATGTGGGAAGGCATAAAA 10096 32 100.0 33 ................................ TTTGGAAGTGTCACATACTCGGTTGGGTCAATT 10161 32 100.0 35 ................................ TACAAAAGTCAGGCCGAGAAGTTAATGGCGGACAA 10228 32 100.0 33 ................................ CAAGTTAATTTCGTATCAGCGTCGCCGTTCGCG 10293 32 100.0 34 ................................ GCTGCGCATCCGGTCAACTATTTCGTGCTGGGCA 10359 32 93.8 35 ..........AT.................... CAAATCTTCTTGGTCTTTGTAATAATTGGAACCAT 10426 32 96.9 36 ...........T.................... ATCTTTGCGGGTATTGCGCCCAGCGCGCCCAGTTAC T [10438] 10495 32 96.9 35 ...........T.................... CAATACGTCATGACTTCCCCTAACACTGGATGGGT T [10507] 10563 32 93.8 32 ...........TA................... CCGTCTACGCACCCAATCACCAGGGTCGCCAT TT,G [10575,10589] 10631 31 78.1 0 ...A.....C.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 95.9 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TCGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTTGCTGTTCGTGGTATTAAAATGTGGTGGGATTAAAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATTACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTAACTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TAAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCCGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGATTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAAACATTTATACAATCAATTTTTTC # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 14577-14939 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000060.1 Alkalihalobacillus clausii strain 7529 contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 14577 32 100.0 33 ................................ CCTGTCGCGGTGGGTGAACTACTATCCGATTAG 14642 32 100.0 34 ................................ TAAGACTGTCAGCTAATTAACGGGGCCTCGCGCC 14708 32 100.0 35 ................................ AATACAGGAATATATACATTTGAAGAGTCGGTCGA 14775 32 100.0 34 ................................ AGATACTCCTATCCGCACAACGCGACCGCATGCA 14841 32 100.0 35 ................................ GGCAAATTGGAAATCTATCGAAGCGACAACCCCGC 14908 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATATCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTCAATGAGAATGAATAGTCTATAATAACTTGTGTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCACAAATATGAAAAAATATGTATGAAGATGGTGAAATCTTGTTTATTTCCCATGGTATGATAGAGGAAAGAGCGGCTTTTTCCTATTATTTAGCGTTTTACTGCTAATAATTAGGAGAATTTCGCT # Right flank : AACATGTCGTCTATATACTGATTCTCTTCGATGGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34-1911 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000061.1 Alkalihalobacillus clausii strain 7529 contig00061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34 32 100.0 34 ................................ GGGAACAAAATTATATTTGAAGCCAGCAATTTGA 100 32 100.0 33 ................................ CGGGCGTTATTTTTTCGCTAATCATTACGCCGC 165 32 100.0 34 ................................ GTACCATCCGAAAACTATAGTACATAGCGCTCCA 231 32 100.0 35 ................................ ATGAACTTTGCGTTATTTGTAGCTCCTCTATCCTT 298 32 100.0 33 ................................ AATTGTCAGCCGTGTCACTTGGTTGTCATCCCG 363 32 100.0 33 ................................ TCTTTGGTGACAGAGAGATTTGTACCAAATAAC 428 32 100.0 35 ................................ AGCAGATGACAGATCACAAGGTTTATGTCGAACCT 495 32 100.0 36 ................................ ATGGATTTAAAAAAGGTGGGGGGTTATCGCCAATCG 563 32 100.0 33 ................................ AAACGCGGAGCTATGAGAATAGCGAAAGCAAGC 628 32 100.0 35 ................................ AATCATTTCTTATTCCAGCTGTATCCGTCGATGCC 695 32 100.0 34 ................................ ATTATAACAAAATATACCATTGTTTCTTATTTCC 761 32 100.0 33 ................................ ATTTGCGCAAGTGGCAAACGAAGCATTGGTAGA 826 32 100.0 33 ................................ TCCTCAAGACAACGTTAGGGTTAATGAGTACAG 891 32 100.0 34 ................................ TTCGATACTAGCAAGTAATTCACATGCTGTATCT 957 32 100.0 33 ................................ TTATGGCTATGACGGTATACATGAGTTGTTCCA 1022 32 100.0 34 ................................ TGAGCCAATGACTATTTCCGGTGTGCGCACTATT 1088 32 100.0 34 ................................ ACAACGCTATCTGTACGGCTCTTTGAAAACCAAA 1154 32 100.0 35 ................................ TCTTTAAAGGCTTGGCCCCAGGGCGTAACCACGTC 1221 32 100.0 36 ................................ AAAAGAAACGGCCTGCCAAGGCAGCGTCCCGCACTT 1289 32 100.0 34 ................................ CTATCACTGTCCGAACGCGCAAAAAGGGCGAACA 1355 32 100.0 33 ................................ ATCGATCCATCCCGTTACCCGTTCGACATCAAA 1420 32 100.0 33 ................................ AGTGCTTCGGCTGCTTTTGGATTGTCCGCCATT 1485 32 100.0 33 ................................ ACTTAGACACACTCATACCTCTCTTTGCGCAGA 1550 32 100.0 33 ................................ ATAGATGTTGCCGACGACCTTGGCGTTATCAAC 1615 32 100.0 34 ................................ ATTTCCCACCAGAACTGGTCATACGTATCATTAA 1681 32 96.9 34 .........C...................... ATAATCGCCAGGATAATTGGCTAATACCCCTTGT 1747 32 96.9 35 ...........A.................... TTATAAACCTAAGAAGTTCCAAACATCTATAGGCA 1814 32 96.9 34 .........C...................... AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 1880 32 87.5 0 ........T..A........A..........C | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.2 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TACTCCTACAAGCTGCTATTTGGATGGGGATGGG # Right flank : CACGCTGCTGCCGTAGCAAATGAACTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCTGCAACCAGCGATAGTCATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAAATCGACACCGAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGCGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14546-14778 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBW01000061.1 Alkalihalobacillus clausii strain 7529 contig00061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14546 32 100.0 36 ................................ TAGTGCTAGGAATGCTAAAGAAGAAACCGCAGGCAT 14614 32 100.0 34 ................................ AGCAGGGAGAACCTTTTCAATCGATATTCCCATA 14680 32 100.0 35 ................................ ATAATATATTCCCACCAATCTGTATCATTGACTAT 14747 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCGAGAATCAGGCCCAAATTCACACATATATCAAACAATAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGCTCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAGGAGCGGCATTTTCCTATACTTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TCAACAACAGGTCAAGTTGGGCATGGTACTGTCTTTGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATAAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //