Array 1 472677-473767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIY010000004.1 Listeria marthii strain FSL W9-0663 NODE_4_length_479123_cov_110.624314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 472677 36 100.0 30 .................................... GACCGTCTACTGAAATAGTCCAAGATGGGT 472743 36 100.0 30 .................................... GTGAAAACTTCTTGTCATCAATCGGGATAA 472809 36 100.0 30 .................................... CAAATTGATCGACAGACCGGCCATGACTTT 472875 36 100.0 30 .................................... CCAGCATAGTTTTAAGTTCTTGGTCTGACG 472941 36 100.0 30 .................................... GTATGGGTATAACAGGTATTCAAGACATTA 473007 36 100.0 30 .................................... GGCGTCCAATAGAGTCAAATGGGCGTATAT 473073 36 100.0 30 .................................... TGATACGCAAAAATATCTATCGTCATCAGC 473139 36 100.0 30 .................................... ATGGTTGTCAAGTACAAATATATGAAAAGA 473205 36 100.0 29 .................................... TTTTTTGAGGAAAATTATATATCACTTAG 473270 36 100.0 30 .................................... AAGGTTTAACGATGTCGCATAAGCTTAGCA 473336 36 100.0 31 .................................... CGTCCTTTTTTAAAACACCTAGTTCCCGCTA 473403 36 100.0 30 .................................... TTGTCGTCGGATCTACTAAGTAGCCATAGA 473469 36 100.0 30 .................................... CAAAATGTTGTCAATTCAAATAAAACGGTT 473535 36 100.0 30 .................................... GAACATTGGTGGTAATGGTTGGACAAGTTA 473601 36 97.2 30 .....................T.............. TAAAAAATGACCATCACAGGTTACTGAGAA 473667 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 473732 36 72.2 0 ......A..T...A......A..G..A.G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTGACTGCGACGATTAGTGAGTTAATAGGTTACGAGCTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTTTATAAATATTTATCAAAGAAAAAGTTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGGTAGAATTAAGAAAGTATATTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAATAGACGGCTTTTCGCAGGTTATTTTGGATCCAGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATGAAAAAATTCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACCCCTGAAAGCTTGATTTTAAGCGACAGAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 640270-636155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIY010000001.1 Listeria marthii strain FSL W9-0663 NODE_1_length_907613_cov_86.754668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 640269 29 100.0 36 ............................. CTTTACGCATAACAGCTTGCCCGTTCGTTCCAACAC 640204 29 100.0 37 ............................. TTCAAAATCGCAGAGGACGAATTTATAGCTATTTCTA 640138 29 100.0 36 ............................. AATTTTACTAATTCCTTTCGCCATTCTATCCCAGTC 640073 29 100.0 36 ............................. ACGTGAAGGCATATCTAGTCCACTCACTTGTAATCG 640008 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTGCTGAAAGT 639943 29 100.0 37 ............................. TCCAATCATATTTGAAAACTTCAAAGTCATAGAAAAT 639877 29 100.0 37 ............................. GAGGCATTATTATTTATAATTTCATGCACTGCATCGA 639811 29 100.0 36 ............................. TCAGCAAATAATTTTTCTGCCTCTTGTTTTGCCTCT 639746 29 100.0 37 ............................. TGCCTTGGAATGCAGTTTTTACTGTTTTAGCATTACC 639680 29 100.0 36 ............................. GTAATTCGTTTCTGCGTTTTCATTTAAGAAATCAAT 639615 29 100.0 36 ............................. TTTGTAACGCCCTGTTTTTTCGTAACGATCAAATAC 639550 29 100.0 36 ............................. AAACTCTGTTGCATTCTGATTTTGATTTGCTTCAAC 639485 29 100.0 36 ............................. TAGTAATCGAATGTAATAATTTTCTCGTCAATCTCT 639420 29 100.0 35 ............................. CTGGTACAGTCGATTTAACTATTCGAGCGTATATG 639356 29 100.0 37 ............................. TTTGGAAACATTTCCTACACCAGTTGTCGGAGATACA 639290 29 100.0 35 ............................. GTCACAGTGTACTCGATTGTTCCATAGGTATCTTG 639226 29 100.0 36 ............................. TCTGATTCACATGTAAAACTATAAACAACCTCATAC 639161 29 100.0 34 ............................. AGCAGTACTTGATACAAACAAAGTTAACTACACA 639098 29 100.0 37 ............................. GAAGTATTTCAGTTTTTTGATTAGAATTAAAATTTTT 639032 29 100.0 36 ............................. AGAAAAAACAAAATGTAATTGCGCTCGCTTTTAACA 638967 29 100.0 34 ............................. CTCGTTCGTAAAAGAATTTCTTTTGCTCTTCTTT 638904 29 100.0 36 ............................. TTACCTCACTAAATCTTTTGTTAACTTCAAGTTCTC 638839 29 100.0 36 ............................. AAACAAATTATAGAAAAAGATAAGCGAAAACAAACG 638774 29 100.0 35 ............................. TCAATCAATCCAAGACAGTAGCTTTTTTCTGCTGT 638710 29 100.0 38 ............................. AGCGTTTTATTTTCTTTAGCGTAAACTACACTAGCCTT 638643 29 100.0 37 ............................. TAACGTCAAGCTCTTTTTCTGCTTCATCACGTTTTAA 638577 29 100.0 36 ............................. CTCAGATAGAGAAGAAAGTTGCAAAGTGGGATGAGA 638512 29 100.0 37 ............................. ATCAAACCAAGTAAAATCGTGGGATGGTTTGAGATTA 638446 29 100.0 36 ............................. AACATTTTACGGCGTATGTAGATGCTTCTACTGATT 638381 29 100.0 36 ............................. AATCTATAGTCTGAATTCTTAAGAACAACTACAAAA 638316 29 100.0 35 ............................. TTTTTTGAGGTCATTTACTGTTTTGCACTCGGAGT 638252 29 100.0 36 ............................. ATGGCAGAAAACCAATCCGTAAGAGCCAATACATCC 638187 29 100.0 35 ............................. TCTTCAGCGTCATTCGCTGTTGCATAATCTTTTGG 638123 29 100.0 34 ............................. ACCGCTGTTTCTGTGTCTGGGATTTCGATTTTAA 638060 29 100.0 35 ............................. AATCCTTACTCAATTCTATATGAGCTAAAAAAGCT 637996 29 100.0 36 ............................. AAAGTTTCGGCAGAAAAAGCGCTGGGCCTAAAAAGT 637931 29 100.0 34 ............................. AGAAAAAGCAGCAGAAAAAAGATTAGAACTTATT 637868 29 100.0 36 ............................. GTCTATAGCCAAGCAAATCCACCAGTTCCTAAATCT 637803 29 100.0 35 ............................. GTCTATAGCCAAGCAAATCCACCAGTTCCTAAATC 637739 29 100.0 35 ............................. TCATAGAAGACACAAAAATGGAAAATACTCACAAG 637675 29 100.0 38 ............................. ATCCATAATATCCACATTTGCCATCGAGCTTTTCTAAA 637608 29 100.0 35 ............................. ATTCTAATTTTGCAGTTGTTAGTCCTGGCAGCGAT 637544 29 100.0 34 ............................. AAACTTGCAAAACTCAATATATAAAGACCCTGTG 637481 29 100.0 36 ............................. TTCGGTTTTGAAGTTCGTAATCTTTTGGGTACATAA 637416 29 100.0 34 ............................. ACAATTCCTGTATTATATTGTCCTGAACATCCTT 637353 29 100.0 37 ............................. ATTGCATCTATGTGGTGTATTTCGCCTCTACGGCCTG 637287 29 100.0 34 ............................. ACAAATTTTGTAAGTCCTAGTTTGTACTTTCCGC 637224 29 100.0 38 ............................. ATATTTACCATCAATCAAATTTTGTTTTTTGTTTAACC 637157 29 100.0 35 ............................. CAAATAGTGAATGGAATTATTCAAAAGTTTTTAAG 637093 29 100.0 38 ............................. AGCTTCATTTTGCGCATAGACTTCTGAAAATGTTTCGT 637026 29 100.0 36 ............................. ATATTTATTGCATTCATATACTAGTAGTGAGCTACC 636961 29 96.6 34 ....C........................ ACACAATACTACTTTGTACTGTCTTAGCAATTGA 636898 29 100.0 36 ............................. CTTGTTTTTTTATCACTGACTCGGATTCTGTAGTAT 636833 29 100.0 36 ............................. AAACCAAGCTAATTATTCAAATAACAACCAAACAAG 636768 29 100.0 34 ............................. TTGTTTGAGCAAAAGAAATAGCAGCCGATTTAGC 636705 29 100.0 36 ............................. CACACTACCAAATTATTTAGCAACGATGCTGAATCT 636640 29 100.0 36 ............................. ACGATATTAAACCAGTGATACTGCTTTGCCGACGTA 636575 29 100.0 36 ............................. GCGAGAAGGGCGTTTTTAAGGGGAGAGGACTTCGAG 636510 29 100.0 36 ............................. GCATTTAAAGCTTTCATGAACGGGCCGCCGAGATCA 636445 29 100.0 37 ............................. TAACTTCTATTCTCTTACCGTTTTTTTCGTTAACACC 636379 29 100.0 36 ............................. TTGATCAAAGAATCCTTGTATCTTCTAAAAGCATTA 636314 29 100.0 37 ............................. AAAACAAACCAACACCCATCGCAGCAGCAACCACAAG 636248 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 636184 29 86.2 0 ...............C......CC....C | A [636159] ========== ====== ====== ====== ============================= ====================================== ================== 64 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAATTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTTTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 657846-656523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIY010000001.1 Listeria marthii strain FSL W9-0663 NODE_1_length_907613_cov_86.754668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 657845 29 100.0 35 ............................. TGTTGCTGGTTTTGCACCTTGGCTTTTGTTTGCAG 657781 29 100.0 38 ............................. ACCCAGTTACTAACATAAAAGAAAGAAGCAATTGCATC 657714 29 100.0 34 ............................. AAGGCGTTAACGTAAAAATCATTCATACTGCCGT 657651 29 100.0 37 ............................. GCTTCTACACATAAACCTGTATGCGTATGTCTTAGCT 657585 29 100.0 37 ............................. GAAGCTTTGGAAATTTTATTTATCATTTGCTGATCTA 657519 29 100.0 37 ............................. ACGATACCACGCAAATCAACAGAATTTATTTGTACAC 657453 29 100.0 37 ............................. AAAATATATCTCAGAATAGCATCATTCGCATTTAAGC 657387 29 100.0 37 ............................. TTAACTGCCATAACTGGCTTTTTTTCTTTCGCTCTTC 657321 29 100.0 36 ............................. GCTTCCGCTTCGATGCCAACACTGCTCATTGCTGCC 657256 29 100.0 37 ............................. TCGTCAAAAACAAAAAAAGGTTCAATTTTTCTATCTG 657190 29 100.0 34 ............................. TATGAATGGGTAAATGAATATGTAGATAGTAAAC 657127 29 100.0 35 ............................. AACGTTAATGAAGACTGATATTGAAAAAGCAATGA 657063 29 100.0 34 ............................. GCTGGTAGAAGAATATTATTAATAGATGGCGAAG 657000 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 656937 29 100.0 36 ............................. ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 656872 29 96.6 34 ..A.......................... AAAAACATATTTAAATATCCCTACGCTTTTAAAC 656809 29 96.6 35 ...C......................... ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCAT 656745 29 100.0 35 ............................. GAGGTTGGTTTTGATTGCTCGGGACTAGTTCAATG 656681 29 93.1 35 ..............A..........G... CTGACTAGCACTAAAAAACGATTTCCAATTTTTGT 656617 29 96.6 37 ..............A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 656551 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 98.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : GTGCCACTACTTCGGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACTGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGTTGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACTATGTAGAAAAGGATGGATTTTCATTGGTTTTTAGTCGGTCGACAGAAATAAGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCG # Right flank : GAGATTCCAAATTTTCCATTCCCTATACAAAAAAGCCATCCAACAGGATTTAGGCTTATTTTTTTCCTCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACTATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //