Array 1 12514-13152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMY010000048.1 Emergencia timonensis strain DFI.3.26 CLHHCBIG_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 12514 33 100.0 36 ................................. TTTTTCGCATTTTGATTTAATGTGCTGTACAGATAT 12583 33 100.0 33 ................................. TTGCCGTCGACCGCCCAGGGCTTTGCAATCAGT 12649 33 100.0 36 ................................. AGACTCGCCTCCCTGTCGCAGTCCTCCTTCGTACCG 12718 33 100.0 34 ................................. CTCGCCGATCTAGAACGCGGCAGCAAGGGTACGT 12785 33 100.0 35 ................................. CTCGAAGAAGGAGTCTACTCTAACGAAGAATTTAT 12853 33 97.0 37 ......G.......................... TTGTCACGGATGACCTGGTAAAAGATGCAGAGGTCGC 12923 33 100.0 35 ................................. AGACATACGACCAAGGGCAACACGGAAGTTGAAGT 12991 33 100.0 36 ................................. TTACCTTGAAAACAATTATAAGTCATGATTGATGAC 13060 33 97.0 26 ......G.......................... TCCGAATGTATTATCGCATGGAAACA Deletion [13119] 13119 33 72.7 0 .G........TTG.....A....A.G..A..C. | C [13127] ========== ====== ====== ====== ================================= ===================================== ================== 10 33 96.7 34 GTCTTGCTCCGCATGGAGCAAGTGGATTGAAAT # Left flank : AGAAAGAGGTGGGCATCGCCCATGTATTTCAGGACAATACCACATGCAGCGACTTGTTCTATTCCGGCCGGTTCGATTTTGTGGTCTACGAAAAAGTTGATGAGAATCACAAGCTGCCAGTTTTGGTCATTGAACTGGACGGACGGGAGCATTTCGAGGATGAAGTGGTAAAACGCCGCGACGCACAAAAGAAGGAAATCTGCCGGGCGCATCAAATGGAACTGATTCGGGTGGAAAATTCCTACGCAAGGAGGTATAATCATATTAAGGATATATTGGAGAACTACTTTAAGGCCCTGCGGTAACACAAAGAAAATACCAAACTGTTCTGTTTTACGCTGGTGCGAAAGGCAAGTGAACATGAAATCCCCAGGTGTTTCGCACCAAAATCTTTGCGCGTAAAATGACATAGATGGGTAATAATGGGAGATAGTTTGCTGTGAAAAGAGAAAAAGTGCTAAGAAATATAAATATTTCTAGAATATTGGAGATATTTAGCA # Right flank : TTTGTCGACTATTTGCGCCAGTGGCAGCCTTTATCGATAATAGTTTATTTAAAAGCAGGAGAATAAAATCCTACAGTTAGAAACTATAGCGAAGTTAATATTAACAGGAACGCATGAAGAAGATTTATTTATAAAAGAAACAGGAGATTAATTATGAACGAAATCAAAGAACAATTGAGAATTTTTAACGAGGAGCGGGATTGGGACCAGTTCCATTCACCGGAAAATCTGGCAAAATCCGTCGTCATAGAGGCCGGAGAACTCTTGGAATGCTTTCAGTGGAACAACGACTATGACCAGAGAGCCGTCAGCGATGAAGTCGCAGATGTAATGATGTATTGTATCATGTTAGCGGACAAAATTAATATTGATCTGAAGGAAGAAATTCTTAGAAAACTTGAAGCCAATAAGAAAAAATATCCTGTTGAAAAATGCAAAGGAAGCAGTAAAAAATACGACAAATTAGGAGACGAATGATGGCTGTAATAGAAAGTGTAGAA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGCTCCGCATGGAGCAAGTGGATTGAAAT # Alternate repeat : GTCTTGGTCCGCATGGAGCAAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 68637-68214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMY010000023.1 Emergencia timonensis strain DFI.3.26 CLHHCBIG_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 68636 31 100.0 35 ............................... TTTGGTAACCTCGCAGAGATCATATCTGCCATGAC 68570 31 100.0 34 ............................... TTCGATATAGCGGGATAAAGCTAATCGTTCCGAC 68505 31 100.0 33 ............................... AATTATGTACCTTTTTGCTCCTAATGTTTTAAA 68441 31 100.0 34 ............................... TGACGATATGCCTAATAATGGTAATAGATATGAT 68376 31 100.0 33 ............................... TAGTTTACCTTTGCCACTAATTCATCATGTTTT 68312 31 100.0 37 ............................... CAATCTCCCATCCGCTTATAGTAGACTGCGGCAGCGA 68244 31 96.8 0 ....................C.......... | ========== ====== ====== ====== =============================== ===================================== ================== 7 31 99.5 34 GTCGCATCCTCATGGATGCGTGGATTGAAAT # Left flank : TCCGCCTATGATTACCATATATTGC # Right flank : TCATAATGATTTTAGGGGAAGGGAGGATAGAGGCGTGTGATTGACAAAGAAAGAATAGATTTATAACACAAAGTATAGAATAGAAGGAGTATAAGGTCAGATATATTTATCTTGGGAAGATGATGCCTGAAGTGTGCTTTTGTGATATAATCAAATTACAGATAGGATGCGGAGGAGAACGATTGATGTTTTATACTTTGATGAACATGGGAAGAGAAATAGTCAGATTCAGGACTTACAGAAATGAATATGGGACGGTTCGTGCAGATGATGTCAAGGTATTGCAACAGGATCTGCTTCCGCAGGAATACACAGGTGATGTCATCCGCTTTATTGAAGGAAGGAAAGCGCCAAAGCACAGAAAGCATGTTCAAAGCATATTGAAGCAGTTGGGAGCGGAAGATGTAGAAGGGTTTATCAGAGTAAGCAGTGCAGCATCTCTTACAGATACGTTCTGGGTAAGAGATGAAGAAGCACCAAAAACCTGGGAAGAGGTATCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26862-27848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMY010000037.1 Emergencia timonensis strain DFI.3.26 CLHHCBIG_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 26862 33 100.0 35 ................................. TTTAGTCTCCATCGTTATCACCTCCATCAGGCGGT 26930 33 100.0 33 ................................. CAAATGTGTCCCTGCGTCCATATCCTGCAAGGC 26996 33 100.0 34 ................................. CTCACAGGCAAAATGCTGTGCATCGTTAGCACTT 27063 33 100.0 35 ................................. ACAAAGAATTGAGTCCATATGGACTAAGAGTGTGC 27131 33 100.0 35 ................................. GACCCCGGCTGCGATCTTAGAGAAGCCCGGTTTCA 27199 33 100.0 36 ................................. TTCGCCCGTGATTACGTAATCATTTTCTGTGTTTTC 27268 33 97.0 34 ..T.............................. TCTTCGATGTCAGCAGGGAGGATTTGCGGACAAT 27335 33 100.0 34 ................................. ACTTATACCGTCACCGACCTTCATGCGCACTTTG 27402 33 100.0 34 ................................. AACTCCATTCCATACACGATACCCGTTTGTTGCC 27469 33 100.0 37 ................................. CTCCGCCTAAAGCCATTTATTTCACCTTCCTTTTCAT 27539 33 100.0 36 ................................. ACCGAACACCGTAATCTTTGGGAAGTCAGCAACGGG 27608 33 100.0 37 ................................. TTGTTTCGGGTACTGTTGCAAGGATTTCCCATACCAA 27678 33 100.0 36 ................................. GGTGCTACGCAAATGCTGGGCGAAAATGAGGGTATC 27747 33 100.0 34 ................................. TGTATAAAGCGTCGCTGACCATCTATTATTATTG 27814 33 100.0 0 ................................. | CT [27836] ========== ====== ====== ====== ================================= ===================================== ================== 15 33 99.8 35 GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Left flank : TGGAGAGCTATCCGCCATTTTTATGGAAATAAGGAGTGTGATATATGTTAGTTTTGATTACTTATGATGTGTCTACGCAGGATGGTGCCGGCAAGAGAAGGCTGCGTAAAGTCGCCAAGGAGTGCGTGAACTATGGTCAAAGGGTGCAGAATTCGGTATTTGAGTGCATACTTGATGCATCGCAAGCGTTACTGCTGAAAGACAAGCTTTTGTCGATTATTGATGAGACGCAGGATAGCCTCAGGTTTTATAATCTCGGAAACAATTACGAGACAAAAGTGGAACATTATGGAGCTAAAGAAAGTTATAAAGCAGAAGGCGTTTTGATGGTATAACCTTGGTGCGAAAGGCAAGTGAACATGAAATCCCTGGGTCTTTCGCACCTGTATTCTTGTAAGTTTAATTCCTTATGTGGAAATATATGTTACATATGGTTTGTCCAAATCTAAAAGTAATACAAATTAATGGGAATTTCTTTAGGAGATTGGCGTTAATTTGCA # Right flank : TATCATCCAGTTTATACAGCAGCACCAAATCACCTGCGCTACACTCTGCGCAGAGCAGAAGCATACATACCACCATATTGTGCTATATTAGAATACGAAATAAAAGGCATGGTATTAACTAACTGTTGGAACAAAATAGACACGCCTTTCACCAGATTTTCTTGCGTTTTTAAAAAATCTTTTTAAAGATGAATTGATTTTATGATCAATTCTTTTTCTATATCCAGTGACTTTCCTCTATCTCTTCCGCATGAAATCCTCATGTTTTGTAAACACTATCCATACGACAAATTTCGACAGCGTAGATTGTTTGGCATTTACGGTTGATGACAGGCTTGAGCTGTTCAATTGTCGTATTGGGCAAACTTTTTCTGCAATTATCTAAATGAAATGCAGACGAATGTCAATAAGCGTGCCTATTAGTTCAATTTTATCATTACGATCAAAATTGTATTGTTTTATGTATGAGAGGTGCATGGTATACGTATTGTTCCCCTTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMY010000042.1 Emergencia timonensis strain DFI.3.26 CLHHCBIG_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 27 31 100.0 35 ............................... ACCCGATAGGATACGGGGTACTCCTCGTATGTCTC 93 31 100.0 34 ............................... CGCAGACGGAAGAAACACTCAATGACTTGTTTGC 158 31 100.0 34 ............................... TACGACTTGTGCGCATCCAGCCGTAGTCCAATAT 223 31 100.0 34 ............................... AGGGAGGAGACCGAGGGGCCTCCGCCCATTATTT 288 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 100.0 34 GTCGCATCCTCATGGATGCGTGGATTGAATT # Left flank : TCCGCCTATGATTACCATATATTGCGG # Right flank : TTCACAATGATCTCGGGGGAAGGGAGGGCGCTATATAACAAAATTTCTGCAATGATACGACATCAAGTAAAAGTATAGTGCAAAAACATAAAAAAAGGTCAAGTGGGTATCCTTGACCTTCTTTCGCTATTAAAACTGCGTAACCCCCAAGTTACATTTTAATAGCTATTGGTGTTTGCTTTGAACAAAAGCAATTTATAGATTGTGAGACCAGTGTAATATCTGCAATCTATAATCATATTATACAGAAAAATCTAAAAAAGAAAAGACCATGTCTAAAATTGGAACATTTTGTTTGCATTTGACTACATAGGATTGGGTTTATTTGTATAGGTGACAATAAAAATAATTTGTGTTAGAATAATTACATTGATAAAACAAGAAAGGAAAGAAAACATGAAAAAACTAATGGCGTTAGTATTATCAGTTGCGATGGTGATCTGTGCATTGCCAGCGGCAATTTTTGCCGATGATACAGCAGCAACTGCAACTGACTTAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCATGGATGCGTGGATTGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //