Array 1 233-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLO01000006.1 Lewinella marina strain MKG-38 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================== ================== 232 33 100.0 34 ................................. GGGGTCAATGGGTCAATGGGTCAATGGGTCAATG 164 33 100.0 21 ................................. ATGGGCGGCAAGGCGGTCAAT Deletion [111] 122 33 100.0 43 ................................. ATCGCCCCTCGCTTCGCTCGGGTGGGGGCGGCAAGGGCTCACG 46 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =========================================== ================== 4 33 100.0 33 GGGTGAAGGACTGAAGGGGTGAATGGGCGGCAA # Left flank : GAAGGCGTGGAGATCAAGACCTACTCGATCATCTACGAAGCCATCGACGAGATCAGCAGCGCCATTGAAGGCATGCTGGAGCCGACCCGCGAAGAGAACACCGTCTGCCAGGTGTCCGTCCGCGAAGTCTTTAAGATCTCGAAGGTGGGTACCATCGCCGGCTGCTACGTCGACGAAGGCAAGATCACCCGCAACACCCTGATCCGCGTGATCCGCGACGGTATCGTCATCTTCCCCCTCAAGGAGGGACAGACCGGCGAACTGGCGAGCCTCAAGCGCTTCAAGGACGATGTCAAGGAAGTCCGCGCCGGTATGGAATGCGGTCTCAACATCAAGAACTTCAACGACATCAAGGAAGGCGACGTCATCGAAGGCTACGAGATCATCGAAGTCAAGCAGAAGATGCAGTCGAACAACTAACCGCTGGAGTTTACTCCGAATCGATATGGAAGGGTCAAGGCTTTGTGCTTTGGCCCTTTTCTTTTTGGCAAGGATTGAAT # Right flank : AGGGGGTCAATGGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.34, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTGAAGGACTGAAGGGGTGAATGGGCGGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1156790-1152403 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLO01000001.1 Lewinella marina strain MKG-38 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1156789 29 100.0 37 ............................. TCTTTACGATAGAAGTAGTCCGGAGAACCGAGGGTGA 1156723 29 100.0 36 ............................. TTCACGATGCGAGGAGGGGAGCAGCGGGCAGCCATG 1156658 29 100.0 35 ............................. GTGTCTATATGTCCCACAAACTGTTGGTCAACCTC 1156594 29 100.0 35 ............................. TATGTCCACCATGGCCGGTACCGTGCAGGTGACCC 1156530 29 100.0 36 ............................. CTTGCCATCGGTGGCCTTACCCGTCTTGTGGGCTGG 1156465 29 100.0 36 ............................. GCCTTTGTATTCGGAGGTATGCGCGCCCCCACTAAG 1156400 29 100.0 36 ............................. GTGTTGATGCTCCTCAACGTGGTTGGACTTCGGGCA 1156335 29 100.0 36 ............................. GTCTTTGCGGGCCATTATCGCCGTGTAAATAGAACC 1156270 29 100.0 37 ............................. TCGATGATGGGGTCGTCATCCGGGGTGGTTTGGGTGA 1156204 29 100.0 37 ............................. TCGTGTACGTCCTTTCCCTGCGCCCCGGTATCAGTGG 1156138 29 100.0 35 ............................. TGGATTGATGCCTTTCACGATCTGAACGGCGTAGC 1156074 29 100.0 36 ............................. TTGCTACTACCCATGTTGGTGGCATTTCCGAAACTA 1156009 29 100.0 35 ............................. AACGCGAAGCGCTGCGGCGATACTATCGCCTAACC 1155945 29 100.0 35 ............................. CAACATAGGTCTGCTTGGTCGTTTGTCCTAAAGCC 1155881 29 100.0 37 ............................. TTGTAGTGCCTTATACCTTCCTGTTTTTTGGTACGGC 1155815 29 96.6 36 ......................A...... TCTTTCATGAACATTTCTGCGCCGTCAGCGTGAAGG 1155750 29 100.0 37 ............................. TGCCAAAGACCGAATAGGGGATGCTCTCGATCAGGCC 1155684 29 100.0 36 ............................. TTGCTCATGGCAAACTGGCAGGAATCAACCGAAGCG 1155619 29 100.0 37 ............................. TTGGGGTTGAAGACGATATTGGCGTCAGGCATGTACA 1155553 29 96.6 36 ................T............ ATGAATGGTGGTCGCATCTTCGCGGAGGGCGATTTT 1155488 29 96.6 36 ................T............ TAAACTACGCCACCGCTTCCCCGCAAATGGCTACTA 1155423 29 96.6 36 ................T............ ACGTAGCCAAGCCCACTTACGCCTTTGAGCGGGATG 1155358 29 96.6 36 ................T............ CAGGGAGAACCCCCACGGACGGCACATGACAACAGA 1155293 29 96.6 37 ................T............ TGGGTGGTATTCGTACCTACCTGGCTGGTGTCCGTGC 1155227 29 93.1 36 ................TT........... TGGCTGGAACGCTACGGGGGCCTTGCCCGTCCGGTA 1155162 29 96.6 36 ................T............ GTAAATACCTTACTGGCGTTGTAGACCTTCGCCCGG 1155097 29 96.6 36 ................T............ GATGTCTACTATGGCCGGTACGGTTCAGGTGACGCT 1155032 29 96.6 36 ................T............ TCGCTGTGCAGCTCGGCAATCAGCTTCAGTCGCTCT 1154967 29 100.0 36 ............................. GCCGTGTCGAGGATGAACACCACGGCCCCCTCGCCG 1154902 29 100.0 37 ............................. ACGTTTTTTGCTGAGGCGTTCGGACCCGGAGAGCAGG 1154836 29 100.0 36 ............................. TCGGAGCGGGCCCGCAAGTGGACGCCCAAGACCGTA 1154771 29 100.0 36 ............................. GCCTCGGCATCCGCGCCGGAAAAGCCTTCTACTACG 1154706 29 100.0 36 ............................. TCAATTAAGGTATAAGGTCTACCGGTTCACGGCCAT 1154641 29 100.0 36 ............................. AAGTAGCCCGCAAGATCGTAGCGCAGGAAGGCCTGC 1154576 29 100.0 37 ............................. AAAGCCTACCAGGGCAGCGCAGTGGTTGTTCTTCCAC 1154510 29 100.0 36 ............................. GGACAATCGCGTTCAAAGCCCCCCGCAGCCCCAAAC 1154445 29 100.0 34 ............................. GCCTTACGAATAATTGGACCACCAACTACGTGGT 1154382 29 100.0 37 ............................. TATACAGGGCTATCGTATCGACTGCCTGCGCTGACAG 1154316 29 100.0 35 ............................. CTGATACTCATAGCTGGGGCAGTGAATATCTACGG 1154252 29 100.0 37 ............................. GCTTTCTTCCCATCGTTCCAGTTGGCCGGGAACTGGT 1154186 29 100.0 36 ............................. TGACCCCATTGGCGTGGTGACGGGCGTGGAAGTCTA 1154121 29 100.0 36 ............................. ATGGTGCCGCCATCTTCCGGGGTGCCGGGGTGCCGG 1154056 29 100.0 36 ............................. GAGGAAGCCAAAAAGGACATTGAGGACGTAAACAAG 1153991 29 100.0 35 ............................. TTTAATGGTGAAGTGATACAGCAGCACGGCGGCAG 1153927 29 100.0 36 ............................. CGCATGACCTGGAATGCAAAACTTTAGAAGTCTCTA 1153862 29 100.0 37 ............................. GACGAAATGATCGGTGACACCCTCGTAAAGCGATTCC 1153796 29 100.0 36 ............................. ATGGCAAGGGTACTACCCTCGGTGGCCACGTACAGG 1153731 29 100.0 35 ............................. GCAGCATACCCCGTCGCCGGGGTTTGCAGGTAGGC 1153667 29 100.0 34 ............................. GCTGCTCGTGCTTAAGTCGTTCAATATCACGCTT 1153604 29 100.0 36 ............................. GAGTTTGATCATCGTGGTAATAAGGGACTATTTTGA 1153539 29 100.0 36 ............................. TTTGCGCTGAATGCCTTCATTGCATCGGGTAGCTTG 1153474 29 100.0 36 ............................. ATATTACGTGGTATGCTTTCCTTGCTATGGGATTGC 1153409 29 100.0 35 ............................. TCCTCAACCACCCCATGTTTGAAGATATGGGATTG 1153345 29 100.0 36 ............................. TCTGACTTCTGGCAAGGTTAGCATCGCCACCGACAT 1153280 29 100.0 37 ............................. TAGATGGGCCGCAGGTAGGCAAGGCCCGCCACGATTA 1153214 29 100.0 36 ............................. CCGTCGAAGTCGATGACGGGGGTTTCCAGGGTGCTG 1153149 29 100.0 36 ............................. CTCAAATGGCCCGCCCGCCGGATGGACTACCGCAAC 1153084 29 100.0 36 ............................. TGGAAGGCGTTGAGGGTGTTGGTGGCGCGGCCTCCG 1153019 29 96.6 36 .T........................... TTTGTACTGCCCTAACTGGCTGCGCAGCACCGCAGG 1152954 28 96.6 37 ....-........................ TGGATAGCTGGGCCGTTCGCGCTCTGTTTGCGTGGCG 1152889 29 100.0 37 ............................. TACGATAACCTTTAGCCAGGCGCGGCAGGTATTCCGG 1152823 29 100.0 38 ............................. TCCTCGCTTCGTAACATACCCGTCCACTGATTGCCCGG 1152756 29 100.0 36 ............................. GTTTTGGTTTATAATAAGGGTATGCCTACCGATTGG 1152691 29 100.0 36 ............................. GAATTATCGAACGGCTCAAAGTAACCGCCAGCAAAG 1152626 29 100.0 36 ............................. ATCGAGACGGGAAAGGAAATCGGGATCCATATTGCG 1152561 29 100.0 36 ............................. TAGGCTAGGTACTTAATCTGCATCTTCACTGGTGTC 1152496 29 100.0 36 ............................. GAAAGTTGGAAATCGCTGCCTACATCAACGACGACA 1152431 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 68 29 99.3 36 CCCTGAATTGCACCTAGCGGAATTGAAAG # Left flank : GCATGGTGGTAACACCTTAAGAGGCTACCAACAAACATTATATGTACGTAATTGCTGTATACGATGTAGCCACTGAGCGGACAAACAAGATGCTCAAGCTCTGCCGCCGGTACCTGCACTGGGTTCAAAATTCGGTTTTTGAAGGGGAGATTAGAGCAGTAGAGCTCTCGGAGCTGGAAGCCGAAGCACTGGATATTATGGACCCGACGTACGATAGCTTCATAATCTTTACTAACACACATGTTCACCGTGTGAATCGTCGCATTTTTGGCCGTCAGCGAGCCAGTACGGATCAGTTTCTTTAGTCGTCGAAGCAGCGCCGATAGAAAACCAATGCTAGATGCATTTGGTGGGCCATAGAGTATGTGACTGGTAATCAGTAGGATGTGAGGTCGTCGGTGAGCAAGAGAAATTGCGTTACTAGTTGGCGACGCGCTTGGCGGCTGTTTTTTGACTTGAAACGCCAACTAATGCTATGTTTGCTTGTCGTTTTTATCGGG # Right flank : TCCGTGTCCGGCGTTAACCGAGCGGTAGGATTGTTAACCACCAGCCCCCGGGGGTAGTCCGTCGGGCCTGTAGCCCGGCGTGTAAATCAGTGCTGTGGTGAAATGGGTAGGCGAGGACCTTGCAGTGTGACCTCCCCGCAGGGGCCCAGCACCTGCAAGGGTGCGGTATTTCTGGCAGCATAACGGCTGAAGCCGTCGCTACGCGAATCCCGGGCCGTCGGGCCTGTGGCCCGGGGAAAAACTGGGTGACGGGAAGGACCTTGCAGCGTGCCTGCCCCGCAGGGGCCAGCACCTGCAAGTGTCCGGTATTACTGGCTGCATGACGGCTAAAGCCATGGCTACGCGTACCCCGGGCCGTCGGGCCTGTGGGCCGGCGTGAGATGATACGGACGCTTGCGAGTGCGCCGCTGCGCTGGGCACACCGCGAGGTCCTGGCGGGCCGTCGGGCCTGTAGCTCAGCGAAAAACTGGGTGGGGGGAAGGACCTTGCAGCGTGCCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAATTGCACCTAGCGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.30,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //