Array 1 39255-38510 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVLW01000022.1 Akkermansia sp. BIOML-A35 scaffold22_size63718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 39254 31 100.0 34 ............................... GCCAACCTCTTCTATCAAAGCCAAACCCCGGTAA 39189 31 100.0 35 ............................... AGGATTTGGAACTTACCGTTTCACCGTGGGCCGAA 39123 31 100.0 34 ............................... TATGAGTGCGAAAAGTGCCACTCGATCACCGCAA 39058 31 100.0 33 ............................... CCGGCTGACGTTGCGGCGATGCGAGAGGCACCC 38994 31 100.0 34 ............................... TACAGTCCGCAAGTTGTTCTTCAGGCGCGTTACA 38929 31 100.0 34 ............................... CCGGCGAGGATCACCTGGTGGAATTCGTATTGGA 38864 31 100.0 35 ............................... CAATTTCTCCAATCAGGCCGCGGCATCCGTGCAGC 38798 31 100.0 34 ............................... TTTCCGCATCCCATTCGATTTTAACGTGTTATAA 38733 31 100.0 32 ............................... TCCGGGTTGGCGTTGTAGGTGTCGTCTATCAC 38670 31 100.0 35 ............................... TACCTGTCCCGCACTTTTTGGATTAACACGGCCGT 38604 31 100.0 34 ............................... ATTTTATGCTCATCCGTCCATCCCCTGCGCCTCA 38539 30 77.4 0 ...................A..-..CAT.TG | ========== ====== ====== ====== =============================== =================================== ================== 12 31 98.1 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TGATGGCCTGCCTGGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCTGTGGTGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTATCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGGTATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : GATTGTTCATAATTCGAGCAGAATGCTTTTTCATATACACTGTAGAATGCAGGAGCAACGGTTATGCTTCAACATTTCACGATGCTAAAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCTAAGGCCGGTTAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTTATCAGGCTTCCTGCCTTCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAGTCCTCGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 123151-124384 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVLW01000008.1 Akkermansia sp. BIOML-A35 scaffold8_size264870, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================================================== ================== 123151 31 100.0 34 ............................... TCAAGGCAGCCGATGTGATTGACGCGGCAATCGA 123216 31 100.0 33 ............................... TTTGCGTTGCGCAAAACTCCATGATACCATCCG 123280 31 100.0 34 ............................... GCCTCCACAGAAGCGGCCCACTTCTTGGCGAGTT 123345 31 100.0 34 ............................... TGAGCCTCCGCACTACGGGCGGCAAACTCACTCA 123410 31 100.0 33 ............................... TTCACTCATAATCAATTAACCTGAATCAAACTG 123474 31 100.0 34 ............................... CTGATGGACGCCGTGTTTCCGGGGTGATGAACAA 123539 31 100.0 33 ............................... AAGCAATCACACTTTTCGCACACATGCAATAAA 123603 31 100.0 35 ............................... TCTGTACCTCATACCCGCGATAAGAATGAGACTGA 123669 31 100.0 34 ............................... CTACCTCTCTAACCTCTCCTTTTATTGAAGAGAA 123734 31 100.0 34 ............................... CTCTCTCATTTCCTCTCTCATTTTTGCCCCTGAT 123799 31 100.0 34 ............................... AGGGCCGCCTCCGCGCCATCAGCAAAAGCTCCGG 123864 31 100.0 34 ............................... ATCTCCGACCAAGTCCGGTCCTTGATAGGTGCCT 123929 31 100.0 34 ............................... AGCTTCCCGTACTCCCGGCTCAACTGCCGCTGCA 123994 31 100.0 69 ............................... TCCGATTGGGGAAGACGGGTGCGTGGATTGAAACCGCGGGGAGGTTGGCAAATTCGGCGTCGGTCATAA 124094 31 96.8 34 ............C.................. TATGCTTGCTATCTTTCCCCCTAATTCCCTGTAA 124159 31 96.8 33 ............C.................. ACGCGCCAGCTGCACAACAATCAGGGCGGCCGG 124223 31 96.8 35 ............C.................. GGTCAATGGAGTTGAGGGTACCCGTGATGGTTTCC 124289 31 96.8 34 ............C.................. TATGTCAGGGCGCCACGTTTGATATTGCTACTAC 124354 31 87.1 0 ............C.A...T........C... | ========== ====== ====== ====== =============================== ===================================================================== ================== 19 31 98.6 36 GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Left flank : CTTAAGGGNNNNNNNNNGGGGGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTACGTCATTGAGGCTTGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAAGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTTGGACCTCTGACCTTCAATCCCTGCGCTTCAGGCC # Right flank : CGCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGAAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCGGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTATCAGAAGGGAAATGGCGTTTCCAGAGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGACTGGCTGTACAGAAAGATGATGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAGCAGGAGGAGCCGGAGGCCATGTTTGCGC # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45375-45877 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVLW01000014.1 Akkermansia sp. BIOML-A35 scaffold14_size76610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 45375 33 100.0 33 ................................. CAGAGAAGTTTAAGAATCTCGGAGAGATAGGCG 45441 33 100.0 34 ................................. GCCTACTACAACCAGCTTAATGGCGAATACATGT 45508 33 100.0 34 ................................. CTGATGGTACGGCCAATCCATCTTTGGTAGGCGA 45575 33 100.0 34 ................................. TTGATATTGTACCGGTATCCCGGCATCATGGACA 45642 33 100.0 35 ................................. TGTGCTGGGGTCGATGATCCATTTTTGGCTGTCGG 45710 33 100.0 35 ................................. GTCCAATGCGACCAGATTTTCGACCACGTCCACTA 45778 33 100.0 34 ................................. CACCAGTAATCAAAAATCTTGATGTCCCATGACT 45845 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGTCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCCCGCCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTACAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CCGGGCTGACGCATGACCGGAGCAACAAGGCTTTTGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATGATTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTATCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCACCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCTTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCGCATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCGCACATTTCCACGCTCCACAACCCGTACCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 102564-101595 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVLW01000007.1 Akkermansia sp. BIOML-A35 scaffold7_size198791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 102563 33 100.0 33 ................................. CGGAATCCGTTGCGACGCTGAAGGGGCCATGGC 102497 33 100.0 33 ................................. CCCCGGCAAAAGGAGGGGACGAAAAGACCTGGA 102431 33 100.0 35 ................................. GCGTTGAAGAAATACAGGTACTTGTGCTGAAGAAG 102363 33 100.0 35 ................................. CGGGTGTACTATCTCGCGCCTGACCTTAAAATTGA 102295 33 100.0 33 ................................. TTGCAGGAAGTTATTCCTGGTACTCCTGATGCT 102229 33 100.0 34 ................................. AGGCTGCTGCTGTTACGGAAGCAAAGGCGGCGCG 102162 33 100.0 33 ................................. CTGACGAACTCATTGAAGATATTGTACACCTGG 102096 33 100.0 34 ................................. CGGCAATTTTGTGTCAACTGACGTGCCGTTCAAA 102029 33 100.0 35 ................................. AAGACGTGGAGTAGCGTACTTGATAAATTCCGAAA 101961 33 100.0 33 ................................. ATGAAGCAGGAAATTGCAGTACAGGCACCATCC 101895 33 100.0 34 ................................. GTATGAATCTCCCACGCACTCTTCTGTTCCGTCT 101828 33 100.0 33 ................................. CGTGAAGGTGGAAGTGATTGACGGCGCAGGAGA 101762 33 100.0 33 ................................. ATAGGCTAGAGAGCGGACCGGCGTGCGGATGGG 101696 33 100.0 34 ................................. GAGAGGGAGGCGGATGAGGTGTCTGCGGAGAGCG 101629 33 81.8 0 ...................C....AC...T.CG | CG [101604] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTTTCTCCGGCCCAATTGGTTGAAATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGTGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCATAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAAGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTACCGTCTTCGTGAAGTTGGCGCAAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGAAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCTGCCTGGGAGTATTCTCCGTCCGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 113185-111074 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVLW01000007.1 Akkermansia sp. BIOML-A35 scaffold7_size198791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 113184 31 100.0 34 ............................... CACCAAAACACCACACCGACTAATACCCCTCGAC 113119 31 100.0 34 ............................... ACTTGATAGACGCCGTGAATTCGTCCTAGACACG 113054 31 100.0 35 ............................... GCGTAAAATTCAAACACCTGGATAACACGCTGATA 112988 31 100.0 34 ............................... GGGAACGCCAAGGTTCGCGGGGACGCCGAGGTCT 112923 31 100.0 33 ............................... ATACCACACGTTGTTGGGATCATCCTCAAAGCT 112859 31 100.0 34 ............................... TGCGTGCATACCGTAACGCAGGGGGCGTCCAGCG 112794 31 100.0 34 ............................... CGTTTCCAGCACGGGCGGGAATCGCGCGTTGGGA 112729 31 100.0 34 ............................... TCCGAATACCTCCGGGGCGCCAAACATGTAAGTT 112664 31 100.0 34 ............................... TCATTTGCAGGGGTCCATCCTTCCTTCCCGGATG 112599 31 100.0 34 ............................... TGGTTCGAACTTCCGCATGATAGCACCTTTCTGA 112534 31 100.0 34 ............................... CCACCTTACGCCTGCGGATGTTCACTACCGGAGA 112469 31 100.0 34 ............................... AGCTGTGCTACATAGCCCTGTTGTTTCTTCGTCG 112404 31 100.0 34 ............................... GTTCCTGTCATAGACAAGGAGGCTATCTACGCCA 112339 31 100.0 34 ............................... CGGCATCATTTGGAGTCATGATCTGACCTTGCCA 112274 31 100.0 33 ............................... TCTTGAACAGGCATTACTGTCTCAGGCTGAGCA 112210 31 100.0 34 ............................... TATGAAGCCTGGGATGAGTGGGCTAAGGAGTGGA 112145 31 100.0 33 ............................... CGCCGCCCGGAGGCGGCGGAAAAACCGCATCAG 112081 31 100.0 35 ............................... CAGGAGTTTTTCCTGGGCTTCCCTTCCGGCCAGGG 112015 31 100.0 35 ............................... AGAATTCGAAGCGGAAGTCCGATAATACTGCAAGA 111949 31 100.0 33 ............................... CATGTCCAGCAGCAGGAGGCGAATGACGCCGCC 111885 31 96.8 35 ..G............................ TGGATGCGGGAAGTCGTATTGGAAAAGCGCTCTCC 111819 31 100.0 34 ............................... ATCATGATGGATGGTAAGCAAGGCAAGGAATCCT 111754 31 100.0 35 ............................... GAGCCGCAAAGCGAGGACGGGCGTTTTAAAACGGA 111688 31 100.0 34 ............................... CCAATCTGTGCGGTCGGAAGTTGGAATTTTATTT 111623 31 100.0 34 ............................... ATTTTCATTTTTCAATTTGAGAATGGAGAGGTGA 111558 31 96.8 34 .............A................. TTTACGGCGGTGGAGTTTACCGGGTTGAAGAAGT 111493 31 96.8 34 .............A................. TTCCGGGCCTCTTCCGTTTGCTGCCCGCGCTGCG 111428 31 96.8 34 .............A................. GTATTGGGTAGAGAGCAAGATGGTGAAGGGAGGG 111363 31 96.8 34 .............A................. AACGGAAGTTTCTGGAGAAGGCGCATGGCCGCAA 111298 31 96.8 33 .............A................. GTTTAAATTATCCATATGATTTAATTCTATGAT 111234 31 100.0 33 ............................... GGCGAGAGAGTTCGAGCGTAGCGGCCAGAAAGA 111170 31 90.3 34 ....................C.A.......G TCAAAAAAGGGATCCAGGATCAAAAAGCTGGACA 111105 31 71.0 0 ......T...........TA.TT..AT..CA | A [111087] ========== ====== ====== ====== =============================== =================================== ================== 33 31 98.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAAAACGATCCTTCCCTCAAAGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAAGAACGCGTCGCCGTTAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGGTAATATGTTCCTTAGCGGAATTAAATATTGTAAATACTCCAAGGCCGTTCCGCTCATGGCGGAACGGCCTTCTGTTTTCCAGAACTTGTAATGAAAGGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAATGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGAAGTTCGGCGATTGCTGTAAGTCATTGGAAAACGAAGTTTGACATATCCAATTACAAAATTTAAGTCGTGCGGAATATCGTGATGGAGAGAAGTTGGCGCAAAAAGCCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCTCACGCT # Right flank : AGACAGAAAGAATCTAAAATGCTATTAAAACAATGAGTCCCCTCAATAGAATTTTCTAAAAACGGAAGTGTTTAGTAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTACCATATCATAGTATGAAGAAATAAATATTGCCCCAATTTTATTTAGAGGGGTTAGTTTACAAGGGAAAGGTAAAGTCTAAATTATAAGTAAATTCAAAGCCCGGCCTATTTTCAATGAAAATAGGCCGGACAGGAGAGATTAAAATCCATCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTACCATCATTATTGACAATGAGGCTTCTATGGACTTTTCCAGAAGAATATTGACCTGCAGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCCCCTTCAAACATAAAAGGAAGAGTATTTTTTAATAATTCTGCATCTTCATCACTAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78384-77896 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVLW01000016.1 Akkermansia sp. BIOML-A35 scaffold16_size89337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 78383 31 100.0 35 ............................... CCCCTCAAATAACACTCCTCATGCAACCTACGCTG 78317 31 100.0 34 ............................... CCAAACTTGTCCCTGTCCACCATGAAATCCCCTA 78252 31 100.0 34 ............................... CTGCCGCCTTTGACTACATGGACGGCGTGGGCGT 78187 31 100.0 33 ............................... AATGGCTATCAGGAGGCAGCTCCGGAACACCCA 78123 31 100.0 35 ............................... CCCGCGACCTTGCCGAGGGGGAAACCTCCCCAGTG 78057 31 100.0 34 ............................... GATTTCACAGAAGAGGACAGAGCGGAAGCCAGAA 77992 31 100.0 34 ............................... AGCAAAATCTGGAAAACGGAACATCCAGCCTTTT 77927 31 83.9 0 ....................GC...G...GT | T [77903] ========== ====== ====== ====== =============================== =================================== ================== 8 31 98.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCCTTTTTCCATTTCACAGGCTTTCCGCTCCAAGAGCGGAAAGCCTTTTTTATGCCGGAATACCGCCATATACGGTAGTGATCCGTACCCAACGAGTTGTAAATTGCCCGGAAAACGGATGCGGCAGTACGCCACGTAATAATGGGAAGAGACGTTTTCCGGCACCTCCTTTCCAACCCGTCTCCATGGTGCAGGTGGGAAAGTTTCTGGACGAAATGCGCGGGACGGACTACTATTACTCCTGCATCGCGGCAGGCACGGGCCGTCAGGTGGCCGGAACGACTCCTTGGCGGGATCTTTTTCTGCCCTTCGCACTCCCCGCGCCAACCCCCAGCTCACAGGAAAATCCCAGAACACCGGCGATTCCTGTAACTCGCAGGGTATCTTAGATTGACATCCCCCATATACTATTTCAGGCGTGGAATATGCATCTCCGCGGGCAGGTTGGCGCAAAATATCCTTTTCGTGCCTGACCCTTAACATATATATTCCCCCGCC # Right flank : TTATCAGGAGCAGATGGTCCGATGCGTTCTTCTGATGATTCCTTTTGCCTGAAAGGCTTTTCGATGACGTTCAGACCATGAAAAAGCGCCGGACCCCGGGAAGGGGGCCGACGCTTGCGGTATAGGAGGGGGGAATTAATGGGAGCAGCTGGCGCAGGCCCAGCCTTCGCGGATTTTGGCAAAGAAGTCGTTGCCTTTGTCGTCCACCAGGATGAAAGCGGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCTACCTTTTTGATGTTGTTCTTGGCAAGAATAGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGTTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTTTCCTGGAACAGGTCCACATAGGAATCCATGCGTCCCGCGGTGGTAGGCCCGAAGGAGCCGGAGGGATAGCCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //