Array 1 16438-16709 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOT01000075.1 Levilactobacillus namurensis str. Chizuka 01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16438 28 100.0 33 ............................ CGAGTTGATGACTGCGACATACGAGTACGCGGA 16499 28 100.0 33 ............................ TGTTTCCAAGCAAGGCGCCGCTACCTATCTGGA 16560 28 100.0 33 ............................ CGAGTTGATGACTGCGACATACGAGTACGCGGA 16621 28 100.0 33 ............................ TGCCGTGGTTTTAAAAACGGCAATCAGTCTTTG 16682 28 85.7 0 ......................AA..CT | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTGTTCCCCGTGTGTGCGGGGGTGATTC # Left flank : AACAAGGCGGAAGACCAGATGGCGCAGTGGCAGGCAGATGGTGTCAAGCCGGACGTGATCGTGGTCGATCCACCACGGAAGGGCTTGGCTCCTAGTCTGATTGAGAGTGCCGCTAAGATGGCGCCGCGCAAGGTGGTTTACGTTAGCTGCAACCCATCGACGCTGGTCCGCGACGTGGCCCACTTCGAAGAGCTGGGATACGCAATCGATGGAGACATTCAACCCGTCGACCAGTTCCCACAGACGCCGCACGTGGAATCGGTGACGGTGCTGAAGCGAAAAGACTAAGGTTATGTAAAATGAAGCGTGCTCGCAGCATCTGACGGTTGTCAGGTGAGCGGGCACGCTTTTTTTGTGGGATGGATTATTGGAATACTTGTGAGAGATTGTGTTTTTTGAGACCATGCATTTGCCGGCTAACTGGGTGGCAGGTATAATCGTAAGTGATTAAATTTGGTGGATAGCCGTTTTGTGAATGCTGATTTGGCGGCGTTTGTTTA # Right flank : TTCGCAACAGCGAATTATTAAATGGCGTCTTTGCGTCTACGCGTGAAGGTGCTATTTTTTAGGCCATGATATACATAATTCAAATTGAAAAACGCTTAGACACTGACTAAAATGAAGGGGAGCGATATAAAGGGAGTGGTGAGATTTAGCGGAGATGATGAAATGATAACGGTAATCTTTGATCAACACGGATGCAAGGCGTTTTTCAAACGCTACGCGCATCAACAAGCAATCATTGAACGACAAATTTCAGATGCCGTTAATCGGGAAATCGCAACTGGAATGACGAAAGTCAAGCTGGCAACCCGTACTAAGGTATCTGGAGCTCCCTGTTACGAATTTCGTACAAACTTAGGTAAATTGGGATCTGCGCGCCTAGCTTTTATACATCAAGGTCACCGTGCCACCGTAGTGTTTATCAGTCACGACTTACAAAAGTCCACGTTTAGTCACGAGCTCATCCAAATCCTGGGGGTGACTAAATGAAGTGTATCCCCTTG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTGTGCGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62812-64245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOT01000025.1 Levilactobacillus namurensis str. Chizuka 01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62812 29 100.0 32 ............................. CCCAGAAAGTTTATTTCGAGGAATTAAGTCGT 62873 29 100.0 32 ............................. TACTGCAAGTATTGTTAGACACTGAGCCATCA 62934 29 100.0 32 ............................. TAACGGATTGATATACTTCCTGACACACCCCC 62995 29 100.0 32 ............................. CCATATCTTACCGAGCTGCACGCATGCGATTG 63056 29 100.0 33 ............................. ATTGCTTTGGGTGTTGTAGAGTTTTAAATGTGA 63118 29 100.0 32 ............................. GGGTAAGATTTCCAAGATGGTTACTGGTGGCT 63179 29 100.0 32 ............................. GAATACGATTCAGGATAAGTATGTCCCGGGTC 63240 29 100.0 32 ............................. TTTAGCGGCGGCAGGTAAATCTTATCGAACAA 63301 29 100.0 32 ............................. AAAAAATGCTAAACAATTTTTATATGAGTATC 63362 29 100.0 32 ............................. ATCACCACCTATTATGGAATATCCCAATTATA 63423 29 100.0 32 ............................. ACATGATATTAACTGCCCTAGATACAGGAATG 63484 29 100.0 32 ............................. CGCTTGTACTATAGCCCTAAGGGTGGCGTTAA 63545 29 100.0 32 ............................. CACCATTGGCAACGACCGTGCCTGCTGCTAAT 63606 29 100.0 32 ............................. CAGCACGATAGATAGCCGTTTGGCCACTATAC 63667 29 100.0 32 ............................. GACCGAGTACAGTCTGGCTGACAACCGGATGG 63728 29 100.0 32 ............................. ATTTCTCAAGGGGACTTTGAAGACCAAATGAA 63789 29 100.0 32 ............................. CACAGCCGGAGTCACCACCATCATCAATCGGC 63850 29 100.0 32 ............................. AGCTGTAGACCCCAAATGGGACCCCAGCGCGA 63911 29 100.0 32 ............................. ACGGTGGCAGAACTAAACTCGAAGCCGAAAAA 63972 29 100.0 32 ............................. CTGGTTCTTCCACGACCTCATGTTCTTCTGGG 64033 29 100.0 32 ............................. AGTTGACTCTCTTGCCCTTAACCATGCCACCT 64094 29 93.1 32 .......T....................C GGTCGATTTCTAAATTTAGCACGCAGTCCGAC 64155 29 100.0 33 ............................. ATCCACAATGCCAAGGGGAACATCCTCCAATGG 64217 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTATTCCCCGCGTATGCGGGGGTGATTCT # Left flank : ACCAAGGATGAAATCATTGAGATTGGGGCGGTTAAGCGAACGGCGACTAATGAACTCGTAGAATTTGAACGTTTAATTAAAGTAGATTGCTCAATCCCACGAACCATTACCGCTTTGACGGGCATTACGGCTAAGCAGTTGCGAAATCAAGGTGTGGCTTTGCAGGTGGCGCTTGATCAACTACATGAGTTTGTCACTGATTGTCCAATTGTGGGGTACAACCTGCGATTTGATGAGGCGTTCTTAAGGCAGGCCGTTCGGAAAACAAGCTTGGCTGATTTTTCTAATCGGATGCTAGATGTAAAACCAGTTGTGCAACAGGTAGAACTTTTCTTGGATAATTACCGTTTAGAAACGGTTTTGAAAAGTCACAATATTGAAAATCAGCACCCCCATCGCGCCCTATCTGATGCACAGGCAACCTGGCAGTTAGCAACCCAACTCATAAAAAATGGCGATTTTCGAATTTAGGAATGTTGATTTACCGGGATTTCTTTAGT # Right flank : ATATTTTTAAGATGCTCCCTTGATTGTCATAGTTCTCTACTAAGCCTTCCCAATATGACTTGCAAGACATTTGGAGATTAACAAAATGAAAACTTTATTTTTTAAAGACTAAAGGAGGCATCTCTTTCTTTTATACCTTCAGGTTGGTAGACGTCTTCGCTAAACTAAAAGGTGTTGATAACGTTACGAGACACAATTAGGGAGGACTTAAAAGATGCAAAATCATCAAGTGAGTTGGTTCGAAATTGGGACGGATGATCCGGAAGCAACCATGGATTTTTACGGAAAACTCTTCGGTTGGAAGTTTATTCCATACCACGACATGGAGAATGATTACTACAATATTGTGGAACCCGGGAACGAGTATCCGACCGGTGGTATCTTAGCGACAGCGGGGAAGGTAGCGGAATATTCGACCTTTTACACGTTAGTTGCCGATGTTGCCGAGGGTATCGCTAGTGCTAAAGAAGCAGGGGCACAGGTGATTTGGGGACCTGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 279067-280561 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOT01000002.1 Levilactobacillus namurensis str. Chizuka 01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279067 29 86.2 32 G.GT.T....................... TTCATCATGAGTTCAACACAGGTCAACGCAGC 279128 29 100.0 32 ............................. CGTAACTTAGTCCACGCTTTCCATTCTCAATC 279189 29 100.0 32 ............................. GACATGTCTGTCATGATCAACCGATTCCCAAT 279250 29 96.6 32 G............................ TGGTACTGCTCTTTACCAAGTGATTTCAGCTT 279311 29 100.0 32 ............................. CAGCGGATTATACTAAAAAAAGCGCGAATGAT 279372 29 100.0 32 ............................. CAGTATCAGTGAGAGCGGTGATGGCGATGGAA 279433 29 100.0 33 ............................. TAATTATTCGAGGGCCTTGGGACTATCTGCAAA 279495 29 100.0 33 ............................. TGACTAAAAGATAAGCAATAGTTACTAATTGAT 279557 29 100.0 32 ............................. CAGTCGCTACTCAATTATCTGTTGACCGGGCT 279618 29 100.0 32 ............................. TATTTCAGTCAATGGTCAACAAAATCAATTCA 279679 29 100.0 32 ............................. ACTTCATCAATGGTGCGACCACCGTCAAGGAC 279740 29 96.6 32 G............................ TTAAGAGAAGATACTAGTAATGGATTATCTGT 279801 29 100.0 32 ............................. TAATCCCTGAATTTTCCTTTTTATATTTAGAT 279862 29 100.0 32 ............................. CCATGACTTCTACATCGTCCACATCTCGCCCA 279923 29 100.0 32 ............................. CCGACAGTAATAATCAGGCAATTTTGGGCGTT 279984 29 100.0 32 ............................. TTAGCCAGTTCGTACCAAACGACTGGACCCAA 280045 29 96.6 32 G............................ GATTCAAAAGATTATTGCCGGACCTGGCAAGT 280106 29 100.0 32 ............................. GGGGTTGGCTATTCAAGGATATGGCCAAAATA 280167 29 100.0 32 ............................. AATTTAATGGATCAAAAACGGTTACACATAAG 280228 29 96.6 32 G............................ GAACTGCAACGGATATTGGTGGCCGTCAGCAC 280289 29 100.0 32 ............................. TGTACCACTTCTGCTTCTGGTGACAACTTCTC 280350 29 100.0 32 ............................. AATCATTACCATGCTCTATTTGATTAACAATT 280411 29 100.0 32 ............................. CTTCATCTGAAACATTTTTGTATGCCAATATT 280472 29 100.0 32 ............................. GAGTCGCTAAGTTTACTGCTGTTTTCAATCTT 280533 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.9 32 AGAATCACCCCTGCATACGCGGGGAATAC # Left flank : CTCCGTTAAGGTCTTATACCGCTTTTTACCCAAGTAGGCTTTAATCGCATATTGACCCACCAACAGGGTCAACTGGACCTGGGGCATCATGGCCAGCAACGGTTCATGCCACTTTTCAGCGAACCCCTTCCGCGGGGGCAAGTCCCCGCTTTTGCCTTTGCCCGGATAGTAAAAGTCCAGGGGCATCACCGCAATCCGGTCACTCTGGTAGAACTGGTCGCGTGTCACGCCCATCCAGTCCCGTAACCGGTCTCCGCTCGCGTCATTGAAGTAAGTCTTGGTCTGCTGAGCAATTCGTCCCGGCACCTGACTAATGACTAAAATCGTGGCACTCGGTAACACATGAAATAACGGATCCCACCCCTGTTCGGTGTACGCCGCATTCTCCGGATCATTCCGAATCGCAATTTTAATGTCCTCAACGGTTGTGATAGACAGCCCCTCCTTGGTTTGTGTTACGGCTATTGTACTGCATTTGTTTGTGGTGAATCAATTTTGAT # Right flank : CACTAAACAAATCCTACCACATCAACGTTTTAAAAAACACAAAAGTCATTTTTTTATCACTTCCATCCCAATCGATGACCACGCAAAATTCAGCTCATAGTACTCAGACTATCATTCAAGGCCCAAACTAGCTAACAACCACAAAAGCGCACCTGCCCAACCTCCGGCAAATGCGCTTCCTCACTATAATAATCCTATTCAAATACCATCTGATTCCGGTACAACTCCGCATAGAAGCCGTTCTCCTGCAACAACGCCGCATGGCTACCCTGCTCGATAATTCGACCATCGCGCAGAACCACGATTTTGTCCGCATTCAGGATAGTCTTCAACCGGTGCGCAATCACGAAACTCGTCCGGCCCTGGATCACATTATCCATCGCCGCCTGAATCCGTGCTTCCGTCACCGTGTCCACGTTAGAGGTGGCTTCATCTAGAATCAGCAATCGTGGATTCGTCAGAATCGTTCTGGCAATCGACATCAACTGCTTCTGCCCCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACCCCTGCATACGCGGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //