Array 1 1635446-1634084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMQ010000001.1 Planktothrix agardhii 1808 1808_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1635445 36 100.0 47 .................................... GTCCTGTAATTCCGAACGCATCTGAAGGGCTTTATTGAGAATATCGA 1635362 36 100.0 43 .................................... TTGTGACGTCTATTTTGCAGTCAACAATATTTTGGCCTTCTTT 1635283 36 100.0 36 .................................... AGATTTAGGAATTCACCAAAGGTTAATCCAGTCATT 1635211 36 100.0 44 .................................... TGGCAGCGTTGTATGTCCAACATTAGTTAAAATATTATTTTCAA 1635131 36 100.0 34 .................................... ATCAGGCTGGCAATTTTTTTCATTTCATTATTTA 1635061 36 100.0 36 .................................... AGGAGCGACGGGGGCAGTGTGTAGGATTTCTAATGG 1634989 36 100.0 40 .................................... AAAACCGCCAATGAAACAGCGATGACTTTTAATGCAAAAT 1634913 36 100.0 43 .................................... GATTGATATAGCGGGTTTTTAGTCCCGAAGGCTTTGGTCACGG 1634834 36 100.0 44 .................................... ATCCAGTGGCAACTGTTGAAGGATTGACTTGATTGCAGCGTCCC 1634754 36 100.0 42 .................................... TTTTGACATCCTGGAAAGTGAGTATTTTAAGAGTTCACCAAG 1634676 36 100.0 40 .................................... TACAAATATCCAGGTTGTTAACACAGTCTCCACTTTTACT 1634600 36 100.0 46 .................................... TCCCATAATTATCAACAACCGATAGATGGATAGCATTTATACGAAA 1634518 36 100.0 41 .................................... ATAGGGTCTGCGCTCCATGCGTTCGGTCTTGTTCGCATTTC 1634441 36 100.0 42 .................................... CTTGGTAGACAAAGAGATTGTTTTTGCTCCGCCACACAAGAA GTTAAAGG [1634419] 1634355 36 100.0 44 .................................... AACGAAATCAAGAAAAAAGCCCAAAAATTAAAAGCTGAAAACGA 1634275 36 100.0 45 .................................... TTAAAAGTAATGACCGCATAGGAGGTAAAAACATAGCAGTTCCCT 1634194 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 1634119 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================================== ================== 18 36 99.8 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTAAAGAAACAAGTAAATTTGGCTGAGGATAACCTGAGATTTTATCCGCTTTCTCGCCATACTTGGGGAAGTGTAGAAATTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCGGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTTAACTTTTGAAAAACTCTAAAGACCCTTTTAAAACTCAGATAAACTTAATTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3350645-3350461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMQ010000001.1 Planktothrix agardhii 1808 1808_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 3350644 38 94.7 34 G...................A................. TAAAGAGTCTGTGACGTACTAGAGGTTCCATTTA 3350572 38 100.0 36 ...................................... GGTGTCCAGTTTTTCTGTCCAAGTACCGTCACTTCG 3350498 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 98.2 36 CGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AATGTTAAACTGCTACCTTCTCTTTCTTAACGTTAGAGGTCTTTAACCTCTTAGAAATCGCAACAACTACATCAGCTAATTCCGTGCTAATCTTAGCAACTTCTGAATCTGAAAGTCTACCAGAGTCAATCATTAGAGCGATATCAGCTAAAGGCAATTGCTCAGTTTTAATACTTGACTGAGAAATCCGACGAGCAAAGTCTTTTTTAAAACCCGGCGCTAGTTGCTCACACATTTCTAGTATTTCACCGAATCTCGATAGAGGGATTCCGCATTTTCCTAATTTGACTTCTGAAATATAGGTTGAACTATTGCCAGCTTTAGCCGCCAAGTCTTTACCGCGAACATTAAGATCGTCCAGAGTTTCACCAAAAATTTTATGCAAGTCCATTTGTAATAATCCTTAATGTTTTTTTACTAATTATATACAATTAATGGCTTTATTATAGTATAATAGAGCCATTAAGCAAAGGAAAATATTTTTTTCTATGAACATTCTA # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 4462274-4463490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMQ010000001.1 Planktothrix agardhii 1808 1808_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4462274 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 4462347 37 100.0 36 ..................................... CAAGTAATGTATCTGACCCCGTAGCGGTGCGTTTAA 4462420 37 100.0 41 ..................................... TCTCTATAAGTAAGTTAGCTTTTCTAGTATTCTCAGGACTT 4462498 37 100.0 39 ..................................... AGTTTGGGCGGTGTTTGTGAGGGTCAATCTCTACCCAGT 4462574 37 100.0 35 ..................................... TGATTGACGAGAACCCCATTCAAAGAGACCCTCTC 4462646 37 100.0 36 ..................................... CTAATTGTCCAGTAACAAATTGGTTTAATAGGACTC 4462719 37 100.0 37 ..................................... TAGAGAATAGAAAAGGGATAAAGCAGTTTTTGAAGTT 4462793 37 100.0 36 ..................................... GAAATCAGAGTATGGCGACAGTTTCCGGGCTTTCTA 4462866 37 100.0 35 ..................................... CCAAGCACGTTAAGACCGCTTTGAAAAGTCTACAA 4462938 37 100.0 36 ..................................... CATATTTGTTCCTGAGTATAATTTCAATGCTCCTGA 4463011 37 100.0 40 ..................................... TTGTTAGGAAATTCTCTAAATACTTTTAGTTCGGCGATAT 4463088 37 100.0 37 ..................................... ATGGCGGCGATCGCATTTTTAAGTCGGTTAAGGTCAA 4463162 37 100.0 35 ..................................... AGTGAACCTAATGAATGCTTGGAAAATATAGTTAA 4463234 37 100.0 37 ..................................... TTCCCCAGATAATTCGGGCAATAGTTCGGGCAATAGT 4463308 37 100.0 37 ..................................... GTTGTTGAAAGATTTTATCGGAAGCATCAAGAACCAT 4463382 37 100.0 35 ..................................... TCCAAAATAGATTTATGCTCCGAGACAATTGGAAC 4463454 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGATTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //