Array 1 162655-162320 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYEA01000002.1 Salmonella enterica subsp. enterica serovar Newport str. RI_10P069 SEENP069_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162654 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 162593 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 162532 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 162471 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 162410 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 162349 29 100.0 0 ............................. | A [162322] ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGGCGATGTATGCCGCGACGATCGAGAGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1150-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYEA01000022.1 Salmonella enterica subsp. enterica serovar Newport str. RI_10P069 SEENP069_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1149 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 1088 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 1027 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 966 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 905 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 844 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 783 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 722 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 661 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 600 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 539 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 478 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 417 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 356 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 295 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 234 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 173 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 112 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTCAGCTGTTCCATACTCACCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19006-17819 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYEA01000022.1 Salmonella enterica subsp. enterica serovar Newport str. RI_10P069 SEENP069_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19005 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 18944 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 18883 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 18822 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 18761 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 18700 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 18639 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA C [18630] 18577 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 18516 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 18455 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 18394 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 18333 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 18272 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 18211 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 18150 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 18089 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 18028 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 17967 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 17906 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 17846 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //