Array 1 7857-8753 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUB01000126.1 Leptospira noguchii str. Cascata ctg7180000011613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7857 37 100.0 34 ..................................... TTTTGGAATTCCACCAATTAGAGGATAAATCTGA 7928 37 100.0 35 ..................................... CATCTGCATCCACGTCGGGAGCACCCATCCTAATT 8000 37 100.0 35 ..................................... AGTTTTTTGCAAGTTTTGTTCGCACGTAAATTTGA 8072 37 100.0 34 ..................................... ACATCTGTGCCTTGACGGTGTATTCCGTCAATTG 8143 37 100.0 35 ..................................... AGTTTTTTGCAAGTTTTGTTCGCACGTAAATTTGA 8215 37 100.0 37 ..................................... ATTCTTAGCTGGTTTTGCAGATCCAGATTTTGGAGGT 8289 37 97.3 33 .....................C............... GACTCGATAGAACCGGGAACGTTGATGTCTGGA 8359 37 97.3 35 .............C....................... GATAAACCAGAAGGACCATAAAAAATAATATTATG 8431 36 83.8 34 ....TT......AC......-.G.............. ACAAACACAAATCAGATTTCGGGAATGGATTATG C [8435] 8502 36 83.8 34 ....TT......AC......-.G.............. CCTGTGAATAACATTAGGAAAAGTGCATGAAGGA C [8506] 8573 36 83.8 34 ....TT......AC......-.G.............. AACAGAGCTAGGAATGAGCCTTCAGTATTCTGAT C [8577] 8644 36 83.8 35 ....TT......AC......-.G.............. TTCGTCCAGGACGCTTGCTTTGTAAAGTCCGATGA C [8648] 8716 37 89.2 0 ................................T.CGT | C [8747] ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 93.8 35 GTTTAACTTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : GCAAAGAAAAAATATAATTTTTCGCCTAACATCAGTTAATTATAAGTAGTAGCTTCTCTATTACTTATAATAACGTGCTAAAAACTATATTTCGAAGTTTTGTGTGTTGTTTCTCAGTATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCTTTTGAGTAGCCGATCCTTTACAATGAAATGCTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCAACCCTATTAAGCCGCT # Right flank : TGCAACCGGTTGTCGGGTTCCACGTAAGTCAGGTTCCTTCTTCTTGTTAGAGGAAGCAGACTAAAACTGAACGCGGATTTATATAACGTGAGTTCAGTGCAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTTTTAAACTTTCTGAATCAATTCCTAAAATGTGGGAACTCATACTGTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATTGTAGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGGATGGGCGATGGGCTCTTTTTGTAATAGTTCCCACAATTTTCAAAGTTTAACTGGTAAATCCATAATTTGCAGTAGTTCCCACAGATTAATTCGTATAAAAGAGTTGTTGAAAAATTTCATAATGGAAATGGAGATTAGGAATA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACTTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 188-1086 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUB01000222.1 Leptospira noguchii str. Cascata ctg7180000011645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 188 37 100.0 35 ..................................... CTGGAACGAGGACGAGAAGGAATTCGCTCAGAAAA 260 37 100.0 36 ..................................... TATTAGCCAATTGGGAATCATTTGTTATCTCTTTTG 333 37 100.0 37 ..................................... CGATACCCGCTAATCCTGCCCAAGGGAGTGCGCGCGA 407 37 100.0 34 ..................................... TGAATAACAAACCACCATTCTACCTTGTAGACGT 478 37 100.0 36 ..................................... TGAAAAAATAGAATGTCTTTGTTGATAGCAAGGAAT 551 37 100.0 34 ..................................... TGTTCCTTTGTCATCTCGAGTGGAATAGACTACG 622 37 100.0 34 ..................................... CTCAATCGAATTGATTCCAGTCAGTGCCGTGTTT 693 37 100.0 35 ..................................... TTTGTAAAATCCCCATGGAGAAACTATTTTATATT 765 37 100.0 36 ..................................... CTTTTCTAAAGTCGAGATCGTATCGAGCTTCTTGTT 838 37 100.0 34 ..................................... CGAATCGCATGGCCCGAGTTTGAATTTGTTTTTT 909 37 100.0 34 ..................................... ATGCCTCTCGCTGTGGGGACTGGTGCATATCTAG 980 37 97.3 33 ..........................C.......... GCCTTCAGCAGGAACCCATTCCATAAGTTCTTT 1050 37 97.3 0 ..........................C.......... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 99.6 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATTTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCTA # Right flank : CACTTTTGGGAATAATTCATGCGTTTCGTATACAATTTCTTTCTCTTATCAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATATAAAATCTATCGTTAAACTTTATAGTAAAATACAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTTAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAGTAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 22729-23625 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUB01000245.1 Leptospira noguchii str. Cascata ctg7180000011519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 22729 37 100.0 40 ..................................... GAGCGAAGGAAAGTCACTATCACATTGATGCAAGATTCAC 22806 37 100.0 34 ..................................... TATTGTCTCTGATCGATTTTGCAAATTTAATTAA 22877 37 100.0 34 ..................................... AGATATTGACTCAGGTTGCCATTATTTATTCCGG 22948 37 100.0 36 ..................................... TCGGAAGAGACGATAAATCAAGCGCATCCGCTTGAG 23021 37 100.0 35 ..................................... TATCTGGGTTCAGAAAACATTTAGAAGATTGGAAT 23093 37 100.0 34 ..................................... AACAACAGAATCCTCGGTCGCAAAACGAGGCCAC 23164 37 100.0 35 ..................................... TTTTGGACGACCCTAACAAAGGATCATCCGTAAGA 23236 37 100.0 34 ..................................... ATTTCGGTGTACCGTCTTCGCCAACATCATTGCT 23307 37 100.0 33 ..................................... CTAACAAGATCCACACGAGCCCCGAACAGGTCC 23377 37 100.0 33 ..................................... CTGGAACGAGGAAGAGAAAGAATTCGCTCAGAA 23447 37 100.0 34 ..................................... GCCTTTACGGACTTAGAACTAGATTCCGACAAAA 23518 37 100.0 34 ..................................... TTCTTTAGCCGTTACTTTACTTCTTGCGAATGAT 23589 37 97.3 0 ...........................C......... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.8 35 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : AGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGTACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAATTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGATGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGTAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTACAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTACTTATACAGTTTCCTTAGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGTGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAACGTGAGTTCGACGTAAGAAAATTGGGGCGAATAATAAACTCAATGCAACGACTCCCTATGGGTCGTCGTCGCAGCTCGCAAATTTCATAGTTAAAATGGCTCACGACCGCGCTTTTCGCTCCAATTCCTTCGGAATTTTTCAAACTCAATGCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1443-401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUB01000278.1 Leptospira noguchii str. Cascata ctg7180000011432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1442 37 100.0 34 ..................................... CTCACTTGATTGAGACTCTCTTGCTTGGATAGCC 1371 37 100.0 34 ..................................... GATTCCAGTTTCGTTATCGAGGACGAGGATAGAA 1300 37 100.0 34 ..................................... TTTTTCGTTGTCGCTCATTGTTCACCTCTGTTTA 1229 37 100.0 34 ..................................... ATTGACAGAAGGTCAGGACTTTATAGATGCTCAA 1158 37 100.0 35 ..................................... TCTGAGTTTTTGTGATTTGCGAATTATTGGATACA 1086 37 100.0 34 ..................................... GTCTCTATAAACTCGGTCCCAAAATGTGGGCACT 1015 37 100.0 35 ..................................... CCCCGGAATGGAATCGATCATAATCCTAGCCGAAA 943 37 100.0 37 ..................................... GCTAATGATTCTAAACATCTCCGACCAGAGACCGGAG 869 37 100.0 35 ..................................... ATTCCCCTGCAAGTGTTAGTTGAAAAGCGTCTCTA 797 37 91.9 34 A................TG.................. CGGTTGGGAGTGTGTCGTCGGACACGTTGGCGCA 726 37 100.0 36 ..................................... TGAATTCGCATGTTTTGAAAACGATCGACGGAGTAA 653 37 100.0 36 ..................................... AGAAAATAGTGATTCTTTACAGTTGCGTCGACTATC 580 37 100.0 35 ..................................... TGAGAGGTATAAACTTTGTTTCGAAAAATATCTTC 508 35 86.5 36 .......A...A....A....--.............. ATCACAAATGTAAACTCAGATTTACATTTGACTAAA 437 37 70.3 0 ...........G......G.T.AGTT.C.T..A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 96.6 35 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGATGCTGAGTTCAGGAGGGGTTCGCTTTAGTTTCATAAAATGTGGGGACTAACTACAAAAATTGAACTAGATTAGTACTGCTTGAAAATTCCCAAAATACCAAATGAGACAAAATCTGTGGGAACTACTGTAGTTTATTAATATTTTCTAAAGAATGACCGCGTAAAATTCTTTGGGTTTTGGGACAAGTTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCCCTAGACATCCAGTTACTTAGCAGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACCATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATGACTTTTACCGATCCCTACAAAATTAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGAATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 4655-5757 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUB01000009.1 Leptospira noguchii str. Cascata ctg7180000011643, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4655 37 100.0 33 ..................................... ATGGAAACGGCACCGGTTTTTAACTCGATCGTC 4725 37 100.0 33 ..................................... AAAATCATCCTGGCTTTCGCCTCCAAAATGTTC 4795 37 100.0 33 ..................................... TACTGATTTAACAGTTTGAGCTGAAATCGATTC 4865 37 100.0 34 ..................................... TCATGGTGGTCTTTGCTTACGACTTCATTCTCTT 4936 37 100.0 34 ..................................... AACGCAGATACCCTCATCGGAGCAGGAATAACAG 5007 37 100.0 34 ..................................... TGCTCATTTTGTATCCTCGATATTATCTAACGCT 5078 37 100.0 37 ..................................... TGTAATATGTCTACGCTTGATCTCGTCAAGTGCTTGC 5152 37 100.0 33 ..................................... TTGCCTGGACTGTAGATGAGGCCTTATCTCAAA 5222 37 100.0 33 ..................................... ATCCTGTGATCCGTATATTCGCGTTGTTCTTCA 5292 37 100.0 35 ..................................... AATTTCCGCATTTAAGAAATCTTGAATTCCTTTTT 5364 37 100.0 35 ..................................... CAGTTGATTCCCCACTCGATTTCCGGATGTCGTAC 5436 37 100.0 34 ..................................... AAGTTGATAAGATCCGAATCAGTCGTATTTCTTA 5507 37 100.0 34 ..................................... ACCTTTGTGGATATTTTGTTAAGTATAATCACTT 5578 37 100.0 34 ..................................... TGTTTCTCCAATCACTTTTAAACGATATGGTATT 5649 37 100.0 35 ..................................... TGTTTGGATATATAACTCTAAAACCCAATCGATGC 5721 37 94.6 0 .................C.................T. | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.7 34 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : ATAAGCCATAAATTCTGAAATACATAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCGCCAAAATTCTGAACGCTCTGATTCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGCAATCATCTCAACAAGAATGAAAAGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTAACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAACAGTTGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGCT # Right flank : ATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCTAATCAAAAACAAAATCACCGTAAAGAATCCAGAAGCCACGTAAAAGTCGGTAAAAATGAAACCAGAAGAAAGCTCAAAACAAAAGAATCAATGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACCACCCGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 11886-10941 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOUB01000010.1 Leptospira noguchii str. Cascata ctg7180000011324, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11885 29 100.0 32 ............................. ATGGATAGGCAACCCTACACACAACGGCCGTG 11824 29 100.0 32 ............................. TATATTCCAACGCACGATCTTGGTGACGGAAT 11763 29 100.0 32 ............................. GTAACACTATCATTAATTTCGAGCCATTAGGG 11702 29 100.0 32 ............................. TACCATCAATTAAGTGATGGCGCTAAAGAAAT 11641 29 100.0 33 ............................. GGACAAAATAAACAGAGTAAATTGCTGTTTACA 11579 29 100.0 32 ............................. AGGCACACGTGAGAATAGAGGCGATGCGTTTG 11518 29 100.0 32 ............................. GCAAGCAAATCTTAATATGACTAATTGGATCA 11457 29 100.0 32 ............................. CAAGCGGAATACCAGAATCCAGAATATCCAAT 11396 29 100.0 32 ............................. AGGGGGAGGACATTTTAGAGATCACATCTATG 11335 29 100.0 32 ............................. TTAATTTAAACTCCAATGAATTGATAGTATAT 11274 29 100.0 32 ............................. ATAAGTCCCTTTCTCTTCATGTGGTAGATTCA 11213 29 100.0 32 ............................. TTTAGACTGGCAAGGAACCGCATCGGGTGAAT 11152 29 100.0 32 ............................. CGTGTTCGCACTACCAGACCATGTACCAGACA 11091 29 100.0 32 ............................. TTATGACGATGGTCCTGCATCGCATCTTGTCC 11030 29 100.0 32 ............................. GAACCGTTGTTACAAATAACTGCAATACAATG 10969 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAAGCTTGGCCTTTACTCTGCTGATTCGGCAAAACGCTGATTGCTTGTCTTTCCTTTACAACATATATACTACGATAGAGAGTTTATCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCTTGAGTGTCCTCAAGGCTTTCGTAATATGGTCAAGCCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGGTTCGTCATCCCGGTCCGGAAAGGGGGCGTTTCCCAGCCCTTACCGGGCTGGGCCGGGCTCTCCGCTCCGGTCCTTCGGACCCCCCGCTCGATCCCTAACGCGACGATCCATAGAGAGTCGTGTTGCTGAGTTCAGAGAGCAAAGCGAACGAACGCGACGACAGCGGATCTCCTTCTTGAGATTAAGAAAAGTAATACCGAACCTTACATCGGATCGGCAAAACTTTTCTGAAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //