Array 1 1678041-1676885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076042.1 Dickeya dianthicola strain DDI_ME30 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1678040 32 100.0 34 ................................ AGGGAAACCCGGCGAGGCACGGTATCGACTGGAG 1677974 32 100.0 33 ................................ TTCAAATACAGTTCACATGCAAGATGCAGCTTC 1677909 32 100.0 35 ................................ TTGAAATCATGGACTTCGACAACACCGCATATCAA 1677842 32 100.0 37 ................................ GATATCAGTCTGACTGAAGCCAGATGGGTCACCAGCC 1677773 32 100.0 35 ................................ AGTATTTAGTGAGGCTGAATTCAGCCCAGATGTCT 1677706 32 100.0 34 ................................ CCAGACATCGCTGAAGCTGCGCTGAAGACCGAGA 1677640 32 100.0 34 ................................ TATTAGAAAAGTCCCTTAATTAATCCCTTACGAA 1677574 32 100.0 34 ................................ AATACCATGACCCGTTTGGTAAACAGCATCACTG 1677508 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 1677443 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 1677376 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 1677310 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 1677244 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 1677178 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 1677112 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 1677046 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 1676981 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 1676915 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4025581-4025012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076042.1 Dickeya dianthicola strain DDI_ME30 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4025580 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 4025520 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 4025460 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 4025400 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 4025340 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 4025280 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 4025220 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 4025160 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 4025100 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 4025040 27 89.3 0 .......................-..CG | GG [4025017] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4034296-4035766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076042.1 Dickeya dianthicola strain DDI_ME30 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4034296 28 100.0 32 ............................ TCCGGTGCTCTGAGTCGTTCGAGTAGCTGGAA 4034356 28 100.0 32 ............................ TATAAAAGAGAGTCGAGCGGTGAACCACATCG 4034416 28 100.0 32 ............................ GAGAGGACTGAGAGAGCGTACCCACGCAATCC 4034476 28 100.0 32 ............................ CATATCCATACCCCACCACCCCGGCGCGCAGT 4034536 28 100.0 32 ............................ GTATTCTGGAGCGCCACCAGTGGCGTGGAATG 4034596 28 100.0 32 ............................ AGGAAGTTGGCGTTGAACTGCGTGGTGATCCT 4034656 28 100.0 32 ............................ TGACGGCGGGGATCGAGGTCGGTGTGTTGCGC 4034716 28 100.0 32 ............................ GTTACGTCGCCAACCGGCGACGCTTGGAGTTC 4034776 28 100.0 33 ............................ TCCTCGGTCAGACGCTCATTCTTCGGGTCATCT 4034837 28 100.0 32 ............................ GTACGGTGCCCTGAGTCGTTCGCGGTCACTCG 4034897 28 100.0 32 ............................ GAGTGTACAGTGATAGGTTGACGGGTAGATTC 4034957 28 100.0 32 ............................ GCTAGGGAACTAAGTACAGTACACGAACTCAA 4035017 28 100.0 32 ............................ ACACCCGAGAGACGGCACGCACCCACCAGGAC 4035077 28 100.0 32 ............................ TCCTCGTTCGTTTCTCTCTCTCTATAGTGACA 4035137 28 100.0 32 ............................ ACAAGGACAAACAGCGCGCGGCATTCAGTACT 4035197 28 100.0 32 ............................ CGCACACCTCCCGCACACCTCCCGCACACCTC 4035257 28 100.0 32 ............................ CGAACGAAAGGCCACAGGTTGCTGCGTATGGT 4035317 28 100.0 32 ............................ ATAAATCCACCGTGCCGGGCGGTCTGGTAAAG 4035377 28 100.0 32 ............................ TCCAGATTGCGTTCAGAGAGCTTCGTAGCCAG 4035437 28 100.0 32 ............................ TGTACCTGCACAGCACCGACGTACAGATAAAT 4035497 28 100.0 32 ............................ AGCGGCGGCATTGAAGTACCGATGAATACAAC 4035557 28 100.0 32 ............................ TTTAATGACACGGCCAGTGTTAATGTTATTCA 4035617 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 4035677 28 100.0 33 ............................ ACGACAAAAACCCGGCAGGAAATGCGATCTCGC 4035738 27 85.7 0 ....................G..-..CG | AG [4035756] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //