Array 1 2106-3842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESJF010000372.1 Rhodovulum sulfidophilum strain AB20 NODE_373_length_3888_cov_3.05105_ID_21689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2106 29 100.0 32 ............................. GGCGGTAGCGGTCGTACCGGTGGCCACGGAAA 2167 29 100.0 32 ............................. AGCGTGTGGACCTGATGTTCAAGCCGAGCTCC 2228 29 96.6 32 ............................T GGGGTATGGATCGGGGTGCCGTCTGGTAGCGC 2289 29 100.0 32 ............................. CCTGCTGTGAAGAGCCTTGGAACGCGCAGGCG 2350 29 100.0 32 ............................. GTTTTCCCCGAACGTGATCCGCCCCGAAGCAT 2411 29 100.0 32 ............................. TCGATGCCTCACTGTCCCAAACCACCAACTGC 2472 29 100.0 32 ............................. GCCACCGCTCATATTGCGTGCTCTCGTTGACA 2533 29 100.0 32 ............................. ATCCTTCGCAAACCCGGCTTTGACGTTGCTCA 2594 29 100.0 32 ............................. TAGTTCCGGTAGGTCTGCTTGCCTCGCGTCAG 2655 29 100.0 32 ............................. AATGAGCGAGATCGCGAAAGTGGAGCGCATGG 2716 29 100.0 32 ............................. ACCGGCCCCAACGCCGGGCAGCCCACCAAGCG 2777 29 100.0 32 ............................. GGGCGGGCCGGGATCGCGCCGGCGCCAAATTC 2838 29 100.0 32 ............................. GCAGTTGCCCCCGCTTCCACGCCCGATCAAGG 2899 29 100.0 32 ............................. CACCCCGTACTTGCAAATGAACCCGATGAATA 2960 29 100.0 32 ............................. CCGTGACGATAGGAGATCCTGTCGAGATGCTG 3021 29 100.0 32 ............................. CGGCCCAAGCCAGCATGCGGAGGTCCCATTCC 3082 29 100.0 32 ............................. ACGCGGCCCGTCTCGACCGGGATGTCGCCACC 3143 29 100.0 32 ............................. AGCTGAAATTTGCGGAGGCGATGCGATGAGAC 3204 29 100.0 32 ............................. ATGGCGGGGGACGTCCTGACCTGCTCGGTCGA 3265 29 100.0 32 ............................. TCGTTGGCCGTCTGGAGGTTGAACACGTCGCG 3326 29 100.0 32 ............................. GCCCGCCCGATGACGTTGTTGGCGGCGCTGGC 3387 29 100.0 32 ............................. CGGACAAAACGATATCATTTCCGCCATCCGCA 3448 29 100.0 32 ............................. TCGTGTCACACGTAGCGCATAATCAACGCTTT 3509 29 100.0 32 ............................. GGGTGTGTAGCTGACCTCTGCCACGGGACCCC 3570 29 100.0 32 ............................. GTCAGTGACCAGGCGCACTGGGCCAGACGTGC 3631 29 100.0 32 ............................. CGCACGACGCCGCGGCGCTCATACGTCAGGTT 3692 29 100.0 32 ............................. CCAAGCTGGACGAGGCGACTGCCGCACTGGCC 3753 29 100.0 32 ............................. CCCTTGCGCGCGACGGTTTGCGGGTCGAGCGG 3814 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CTGGCCTGCTAAAGAGGATCATTCCTGCCATCGAGGAGGTTCTCTCGGCCGGAAACCTTCCTCGTCCCGAGCCGCCGCCCGAGGCCGTTTCTCCCGCTTTTCCCGATGCGCCGCCGACGGGCGATGCCGGTCACCGATAGTCTATGTTGGTTGTTGTCGTCTCCAACGCCCCACCGCGCCTCCGGGGCAGGCTGTCTGCCTGGTTGGTCGAGGTGCGCGCAGGGGTTTATGTCGGCGACTATTCGGCCCGGACGCGCGAGATGATCTGGGAACAGGTTCTGGCCGGGCTTGATAAGGGGGATGCCGTCATGGTTTGGAAGGCACCGACCGATCAGGGCTACGACTTTGTGACGGCAGGTCAGAACCGCAGGATGCCGGTGGATTTCGACGGATTGAAATTGGTCAGTTTCTTCCCCGAGCCACCAAGCCGATAGGCGGAAGAGGACGGTAGGCTCTTTGACATCGTGAAAAATTTTTTAGATCAACGGTTTGCAGTAAGA # Right flank : GAGCCCAACTGATGGCTGGCAACGTCATTTTCCTGTTCCCCGCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 685-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESJF010001071.1 Rhodovulum sulfidophilum strain AB20 NODE_1072_length_735_cov_2.22204_ID_23087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 684 29 100.0 32 ............................. AGAGATTTTCATACGCATCCGCGCGACGGATG 623 29 100.0 32 ............................. GCCGAGCTTTTCAACGAGCCGCGGGCCAAGAA 562 29 100.0 32 ............................. ATCCCTGTGGCGGAGCGCGATCTGATCATGTC 501 29 100.0 32 ............................. GCGCTGGCGCGGGCGCTGTCTGGCAGGGTGCC 440 29 100.0 32 ............................. CTGGGCTACTATGTGACGGTCAGCGGTGCGGC 379 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CACACGCGGGGATGAACCGGAGCCCAACTGATGGCTGGCAACGTCATTTT # Right flank : GGAGGAGTCGGCCGCACTCTGATAGAAAGTTCCCGTTCTCTGCGCGCCTGGGAGTGAAGCGAGAGCTTGCTAATCATTCCGAATGACTTCCGGTTGTCGTGTACAAAAGCGTCGCGTGGCCGTGCGTCAGCGCTCAACAGATTAACTCCCTCTGACCGCTTCGCCGATCCGCCGCCCGATCTCGCCGGGCGAGGGCGCGATCCATCCGATCAGCGCGACCAGCACGATCCAGGGCGGGATGACATTGACGATGACGGTCTCGACGCGGTCGGCGCGGAGGCGGTTCTCGGATTGCTCCTGGCGGATCTCGCGGGCGCGGGGCCGAAGGATGGAAGGCGCGTTCTCGACCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //