Array 1 477056-477880 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYP01000004.1 Listeria innocua strain Lin13-014 Listeria_innocua_Lin13_014_Contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 477056 36 100.0 30 .................................... CAGTCATAGATGACGCCTTAAAAAGAGGCA 477122 36 100.0 30 .................................... TTCAAAATGATGTATACTACCGTCGGGATT 477188 36 100.0 30 .................................... AGTTTAGCTTCGTGTCTTCAAAGGTAAACA 477254 36 100.0 30 .................................... CTTTACCAATTTCGTCGTATTCTTTGTGAT 477320 36 100.0 29 .................................... AGCTTAGACATGTATTTAGCCGTAACCTT 477385 36 100.0 30 .................................... AAAAATAACAAGCTTGTTGACTTTAAGAAG 477451 36 100.0 30 .................................... AAATCACCTTCGTTTGTTTCTGTGCTATCG 477517 36 100.0 29 .................................... TAATAGCATTGCTTTGCGTCATCCCTTCA 477582 36 100.0 30 .................................... GCAAACACAACGCGATTTTGTTCGACGATA 477648 36 100.0 30 .................................... CCAGCTCAAGCCCTCGGCGCTTACGAACCA 477714 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 477780 36 100.0 30 .................................... GGTTTATATTTGGTATAGTGAAAAATAAAA 477846 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGTGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATGCCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTTAATCCACTCCAGCTAGAAAAAGTTACATCATTATGAAAGAAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACTGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATTATTAAAAATAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 293133-293420 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYP01000001.1 Listeria innocua strain Lin13-014 Listeria_innocua_Lin13_014_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 293133 29 100.0 35 ............................. GTCATTATCGGGGATATTGAGGAAACTGTGGCTGT 293197 29 100.0 36 ............................. GTTTGGAACAACACCAAACTAAATAGCGGTAAAATC 293262 29 100.0 35 ............................. GATCAAGGATTGCAAATACACAAGTTTGAATTTAT 293326 28 93.1 35 .......-......A.............. ACAATAATTTTACTCTTTTTATCCATTTTTCCGCG 293389 29 82.8 0 T...........C..CA.........C.. | A,C,C [293411,293413,293415] ========== ====== ====== ====== ============================= ==================================== ================== 5 29 95.2 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAAACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAATCGCACGG # Right flank : TTTAAAAATTACAGTTTTAAATTAACTCCCTAAAAAATGCCTTTAACAACCATTGACATTTACCAACTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGATGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGAGCGACGATAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //