Array 1 2696049-2697756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033730.1 Achromobacter denitrificans strain PheN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2696049 28 100.0 32 ............................ CGCGCGGCTTACTGGCGTACGGGCGTTCACGA 2696109 28 100.0 32 ............................ GCAGTCACCACTTGCATCAGCTCACGATGGGA 2696169 28 100.0 32 ............................ TCGAAAAGCACCGCCCAGGCGCCGCCGGAGCC 2696229 28 100.0 32 ............................ GAGTCTCAGGAGAATGAACATGAGTATTGCGG 2696289 28 100.0 32 ............................ AGTGTGCGCGGCCCCGCGTGCAACCGCACGCA 2696349 28 100.0 32 ............................ TGTCCGCGCAACCGGCGCAGAAGGAGCAGAGC 2696409 28 100.0 32 ............................ GTGCTGCTGGATCACGGCGTTGACGTATTCAT 2696469 28 100.0 32 ............................ TTGACCCAGCGGTCCAGCTCCGCACAGCCGCC 2696529 28 100.0 32 ............................ GCATAGCGTCCTTCTTTTTTCCCGGAGCCTGA 2696589 28 100.0 32 ............................ TGAACATCTCCCACCGCCGGCAAGCGCCAGCC 2696649 28 100.0 32 ............................ ATCACGGAATGCCGATCCGATCAGGCGGACCA 2696709 28 100.0 32 ............................ TTGACGCTGCCGTACCCGCGCCGTACTTCGGC 2696769 28 100.0 32 ............................ ATATCGATCCTGGCGACCATAGGGCATATAGC 2696829 28 100.0 32 ............................ TTTGTCAACATGGCTAGGCGATGCTTTGCCTT 2696889 28 100.0 32 ............................ TCGCCATCTCTTCGCCCAGCTTCTTCGCGCCG 2696949 28 100.0 32 ............................ TTTTGAGGGTTTCGAAGCGCATATGTTTTCGA 2697009 28 100.0 32 ............................ TCCGTCGGTGTACTGTTTGGGGTGGGCGGCGC 2697069 28 100.0 32 ............................ GAGCATGTAGGCGAGCAGATCGACGGCGTCGG 2697129 28 100.0 32 ............................ ATCTGGCCCCATAACGCCCTTGATAATGGGCA 2697189 28 100.0 32 ............................ AGTTCCGCGATGGCCCGCGCCAGTTCCTCGCC 2697249 28 96.4 32 ...........T................ CTCACCGCCTGCGAAGGCTGCGGCAAGACCGC 2697309 28 100.0 32 ............................ TACAAGACCTATATGAAGCTGTAATCCAAGGC 2697369 28 100.0 32 ............................ GCCCGACGCGAGGTAGGCGCTGACCTGACCCA 2697429 28 100.0 32 ............................ AACCCCTCGTTCACTTGAGCTTGTTGCCCCTA 2697489 28 100.0 32 ............................ ACCAAGCCGGCAAGGAGAAGCGGATGGTCGTC 2697549 28 100.0 32 ............................ AGGAGGTGGGAAACTCAAAATACCAACTTCCC 2697609 28 100.0 32 ............................ TGGAACGAAGAGGTCGGCAGTCATTTCGCGGC 2697669 28 100.0 32 ............................ ACGATGCGGGTAAGCTGGCCGACAGTGTTCCC 2697729 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.9 32 GTTCGCTGCCGCATAGGCAGCTAAGAAA # Left flank : ACGTCTTGCAGGACTTGATGGCCCTGCCATGGTTGCAAGGCATGCGCGATCATGTTCGCCTGACCGATCTGACGGAGACGCCGCCCGGTGTGCCGCATTGCGTAGTGTGGCGTCGCCAGTTCAAGACCAGCGCCGAACGGCTGAGGCGCCGACGGATGCGCCGCAAGGGTGAAACCGCAGAACAGGCCGCCGCTGCTATTCCGACGGTGTGGAACGCCAAGTGGATCTGCCTTTCGTGCGCCTGAGCAGCGCGAGCACCGGCCAGTCGTTTTGCTTGTTTATCGTCCAGGAGCCGGCACACGAGGTTCGTGGAGAAGCGAGATTCAATGCCTACGGTCTGAGCCACGGGGGAACGGTACCTTGGTTTTGAACCCTTTTTTTCGCCTGGAGAAAAAGATCTTTAAAATCATAGAGTTATTAGTCTATTAAAAATTTGGGAGTAAACGAGGGTTGGCAGGGATGTTCTTTAAAAATCAGCGGGTTATTGTTTTTTTCGAATG # Right flank : AGTCCCACATGTGAACTGCCCTTCGAAGGTTGGACGTTGATCCAACTTTCGGAGGTTTTTACTGCGGGGGCGTATTTCATTGCGGCGTCGGGATCACAGTCCCCAGGCCGACAGGTCCGGGTGGCGAACCGCCGGCGCCAGCACGGGCTCCAGCGCGGCCGCGCAGTCCAGCAGCGCGGCGTCGGCGCCCGCGGGCGCCAGCAGCTGGACGCCCATGGGCATGCCTTCGGCGTCGTAGCCGGCGGGAAGCGCGATGGCGGCCGAGCCCAGGAAGTTGGCGGGCCGCAGCAGCTTGCCCAGCCCCGCGTGGCGGGTGTCGTCCGGATCCAGCGCCTGGGCGGCCTGGTCGCAGGCCGGCATCAGCAATGCGTCCACGCCGGCCATGGCCTGCGCGAAGGCGGCCATGTCGGCGGCGCGGCGCAACAGGGCGGCTTCATAATCGGCAGGCGAGATCCGGCCGCCCGCGGCGATGCGGGCCCGCACCACCTCCCACAGCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //