Array 1 6618-5258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEUO010000027.1 Listeria monocytogenes strain 3442 Contig_27_26.1334_354142bp, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6617 36 100.0 30 .................................... AAACACAGCGGCTAATGCGATGTATTCCGC 6551 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 6485 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 6418 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 6352 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 6286 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 6220 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 6154 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 6088 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6022 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 5956 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5890 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5824 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5758 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5692 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5626 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5560 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5494 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5428 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5362 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5296 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5261,5264,5269] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //