Array 1 563742-562994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEE01000001.1 Pasteurella multocida subsp. multocida strain CIRMBP-0817 NODE_1_length_653129_cov_354.729, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 563741 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 563681 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 563621 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 563560 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 563500 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 563440 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 563380 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 563320 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 563260 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 563200 28 100.0 32 ............................ TTTATATTTTCCGTTACTAAGACGCTTAATGA 563140 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 563080 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 563020 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15507-16374 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTEE01000005.1 Pasteurella multocida subsp. multocida strain CIRMBP-0817 NODE_5_length_190357_cov_326.95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15507 28 100.0 32 ............................ GAACAAAGCAGTAGAAATAAGTGAAGAGCGTT 15567 28 100.0 32 ............................ CAAACATTGTGATAAGCGAATTTAGAAACGCA 15627 28 100.0 32 ............................ TCGTGTCAATTGGAAGATTATCAAAAATACTT 15687 28 100.0 32 ............................ AATGGATAGCATTGCTTATTAGTGAAGATAAA 15747 28 100.0 32 ............................ TTGCACAAAGTCAACGCAACCGCATCACAGCG 15807 28 100.0 32 ............................ ATTTATCGAAACAAGATGACTTCTTTCACCGA 15867 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 15927 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 15987 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16047 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16107 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16167 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16227 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16287 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 16347 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //