Array 1 371596-372638 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWRQ01000001.1 Paenibacillus tepidiphilus strain SYSU G01001 SYSU_G01001_Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 371596 33 100.0 34 ................................. CTTTGGGATGCTTGTGTAGTTATATGATTTTTTG 371663 33 100.0 35 ................................. CTGGTTGGATAAAGGATGATTATGAGAAACATTGG 371731 33 100.0 35 ................................. AATGATGCCGACCGTAAGGGCATGTTTGGTATTAA 371799 33 100.0 34 ................................. TCCTCGCTCTTAATTATCAAACATCAAACATCAA 371866 33 100.0 36 ................................. GTAAACGAAAAAGGGCGAAAACGGAATGTTACGAGC 371935 33 100.0 33 ................................. GTCTTCAGATCAATGCTTTTGGTGCTGTTGTCG 372001 33 100.0 33 ................................. CTATGCTGGATAAATCAAAAGCTGAAGTTGCCG 372067 33 100.0 33 ................................. GCTAAAAAACGCGAACGATGAGAACAAAAACGA 372133 33 100.0 36 ................................. AAAATCACATCTAATTCCCAGAAGCAATCTGATAAC 372202 33 100.0 35 ................................. GTCGTCGGCCGTTTGGAATAGCGAGTGTGTTGCGG 372270 33 100.0 33 ................................. TCTGCGCCAGTGGTGCAGAAGGAACAGGCCGTC 372336 33 93.9 34 ............A.......T............ ATTCCGGCCGGTGGCCGGGAACTTGTCCGCGAAC 372403 33 97.0 34 ............A.................... AATGATAATTAAAAAAGACCCGCACAGGTCCGCT 372470 33 93.9 35 A...........A.................... TCTATTGACTGGATTTTGTCGATCCTGTCTTCCTA 372538 33 93.9 36 ............A..........A......... GAGCAGCGACTGTAATCGAAAACAAAGGGAAGACGC 372607 32 84.8 0 ...T................-A....A...G.. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 97.7 34 GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Left flank : ATTATTGTACTTGGTCTACTCCTGAGCATTTATTTCCGTACAAAGGCAATCGAAGCCGACCTCCAAGACATTAAGAGACATCTCGGACTTATAAAAGAAGAGCGGCCGGTGAGCAACGAGGAGATTGAAGCGGAATTGGAGCGGGAGATGAGTGCGGGGGCGGATGGGAAAAAGGGATAGGCTATGCGCTCCTACTAAGCGGGAAGGTTATACGACAAATTCAATATATAATATATAGAAATATTATATCGGTCCTTATATCCGGTTAGATAGCTTTATATCCAAGTGACATTCGCATTTCACAAGATAATCTATCTTGAGGTGCGAATGCCAAGCTCCCATGAAATTCCCGGGTGATTCGCACCTCAAAATTTGTCGATTGCAGACGAAAATGCATAAATTCTCATAAGTCAATATCTGATCTATATCCAATATGATATTGTTAGGGAAGAGTTACATAGAAATGATACGAAATTCAGATCGAACAGGGATGTTTTGCT # Right flank : TTAGACACTATTTTCAAGGAAGCGAGCTGCTAGGAACGTAACCGAATCGGCGGCAGCAGATTTGAAGGTTTTCCAGACTTCCTTGACAACATCGAATTTTTAGGAAACGATGAACATGGTATACTATTGGTAAAGGGGGGATTTAAGTGCACGATTTGCTTGATCCGCGTGTGGATATTATTTTTAAGCGTATTTTTGGCAGTGAACATAACAAGGATGTGCTGCTCGCATTCCTTAATAGCACGTTTCGTGCGGCAGGCGAAGCGCCACTAACAGAAATTATTCTACTGAATCCCTACACTGAACCGGATAGTCCCAACGATAAGATGTCCATAATGGATATTAAAGCACGTACAGCCAAAGGGGAACTGCTGAATATTGAGATGCAGCTGTTCAATCCTTATCATATGGAGAAACGAACGTTATTTTATTGGTCAGAGATGTATTATCATCAAATTCCACGTGGCGGTAATTACAGCACCCTGCAAAAATGCGTAACA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 374169-375892 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWRQ01000001.1 Paenibacillus tepidiphilus strain SYSU G01001 SYSU_G01001_Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 374169 33 100.0 34 ................................. TATCTTACCCGAACCGGGTATATTTGGCAATGAC 374236 33 100.0 35 ................................. CTGTATCCACGCCTGCTTGCTGGGGATTGTCTTGT 374304 33 100.0 36 ................................. GGCAATCCCAGCATACGGCCGGATTCGCGGAACCTA 374373 33 100.0 34 ................................. CGCAAGTTGTTACTGATGCGGTCTATAGTGCGGC 374440 33 100.0 34 ................................. ATCGTTGCAATGGGAGGTAGACTCTCATGAATAA 374507 33 100.0 35 ................................. GTACACATAGAGAAGAAAAAAGCCCATCAGTCATA 374575 33 100.0 33 ................................. TTTAATATGGTTGTTTCTGGCGGTTCGCTGTAT 374641 33 100.0 33 ................................. CTGTAACGTTACGCCGCAAGCGTCTGTTTCCAG 374707 33 100.0 35 ................................. ATTTTTGTTACCTCCTTATTGGTTACCTTTATTAT 374775 33 100.0 36 ................................. CTGGTTGGATAAAGGATGATTATGAGAAACATTGGA 374844 33 100.0 34 ................................. CGAGGACTGGAGAGGACTATAAGATTAAGATTCC 374911 33 100.0 34 ................................. CACATCCGCATACCCTTCGTAAACGAAAAAGGGC 374978 33 100.0 36 ................................. GTCCAATGGAACCTTACCAGCAGTAAAGTGGTCAAA 375047 33 100.0 36 ................................. TGGTTTCGAGGAGGATTTTGATAGACGAGAGTTTTT 375116 33 100.0 35 ................................. CGGAGGATATCGCAGGCCCGGCGTCACGCGAGTAT 375184 33 100.0 34 ................................. CTCGGCAGCGACTTGTCGTCTATTGAGCCCCGTC 375251 33 100.0 38 ................................. CATAATGTAAATTAAGTATTACAGGAAGGAGTGATTGA 375322 33 100.0 33 ................................. CTTTCCCAGTCTCGCAAATTCGGTTATGACTTC 375388 33 100.0 33 ................................. CTTCGCTGCCCGTAGCGGTCAGAGTTTGGAAGA 375454 33 100.0 34 ................................. CTACCATAGCAGCCGTGATACTACCGACCATTTG 375521 33 100.0 36 ................................. AATGTCCGTGGACACGGAAGACTGACTCCGGTTCCA 375590 33 100.0 34 ................................. CCGAGAAAAGATCAGTTACAGTACCTGCCAATTT 375657 33 100.0 36 ................................. CTTACAAAAGGATCAAAAAATTTGTGAGGGAATTTA 375726 33 100.0 34 ................................. AACGGTGCCAATGGTTAGGTGGTCAAATGATTTG 375793 33 100.0 34 ................................. GTTTAAGGCTCTTATTGAATATTACGAGACGATA 375860 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 26 33 100.0 35 GTCGCACTCCACACGGAGTGCGTGGATTGAAAT # Left flank : ACTCAGACATAGCAGTGGTACTTAACGGCTCGTTAATAATTGAAGCAGAATCAGCTTTAGTTAAAAATAAGTTTACCGTTAATGGTACGGTTATAGAACCACGTAAGGTTGAGTAAAATACATTGAAAATGACTTGTTCTGGAGGCGTTATGCTTACTTTGAATAGGTCATTTTTTTGTATTTACTATTTTAAGCGTTTAAAGAGTGGGCGAATTTACTATCAAGTGTAAAATGCATTGGCTGAATTCTGGTACAAATAGAATTGAGTTGAAGTCTAAAAGTGAAATGAAATCGAATGAAAAAGGGACGAAGAGCACTGGTGCGAATGGTAAGCTCCCATGAAATTCCCGGGAGATTCGCACCTCGAAATTTGTCGAAACACTGCAATGGACCATAAGTCTCAAAAAAGTCAATATTCTATCTATATCCATTATGATAAAGTTATGGAACAGTCGCTTTGAAATGATATGGATTTTAGATGGAATAAGTATGAATTTGCT # Right flank : TAATAGCTTTCACTACTTCACTCAAGATGTCGCATAGATTTAAATAGTGTCCTATTAGAGGAAAAAACATCCTTATGTCGAATTGTAAAATATAAGTCGGATTTCCTGGGTTTAATTAGTTTTTTCTTCCTAATCTGAGGAAAGGAGAACAGGAGCTTATGACCTATGTTGCGCATATTCGTCAAAGTGATGATGTTGCTCAGAGCGTACCAGAACATCTTCGTGGTGTGAGCAAGGCCAGTGGAGAGGCTGGTGCTAAGATTGGAGTAAAGCATTTGGCTGAGTTAGCAGGTTTACTCCATGATATGGGAAAGTTCACCGATGAATTTCTAGACTATATTAACCAAGCGGTGTCCAATCCTGACAAACCTCCTCGAAAAGGTTCCGTAGATCATTCTACTGCCGGCGGGAAACTGCTGCACAGTCGGTATCATACCTCTCAAGCTAAGCAAGCTGCTAAGCTTACAGCCGAATGGCTTGCCAATTGTATTATTTCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACACGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 384356-387376 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWRQ01000001.1 Paenibacillus tepidiphilus strain SYSU G01001 SYSU_G01001_Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 384356 33 100.0 36 ................................. TTCCGTGCGCTGGAAGTTACTCATAATCCTGAGACA 384425 33 100.0 35 ................................. ATCAATGTGCACCAAATCAGCATCTTCAACGTCTG 384493 33 100.0 35 ................................. CGCAAGATCAGACCCGACGAGCTGCAGGAGCCGCC 384561 33 100.0 35 ................................. AGGCTCTTATCCCTCCTATTCGTGGTTACCTGACG 384629 33 100.0 34 ................................. CCCATCGCCTACAGCGCTGCCGGATCTGGGACAA 384696 33 100.0 38 ................................. CAAGACGAAATCACTGTTGAGTGGTTGATGGCCATGAG 384767 33 100.0 36 ................................. ATCAGCATTTGCAGCGTCGCTATGTCCTTCGTCCTT 384836 33 100.0 36 ................................. TATTAAGCATAACAAAAAGCCCTCCATCAGTACCAT 384905 33 100.0 37 ................................. AGGGCCGCCCTGCAGCACTCCAGGGTGCAAGAATCGC 384975 33 100.0 34 ................................. TGAGAAACATCATGCTTGTAAATGGCGATGGAAC 385042 33 100.0 33 ................................. CCCATGTCGGAATTAGATTAATAACTCACAAAC 385108 33 100.0 34 ................................. AGGGCCGCCCTGCAGCACTCCAGGGTGCAAGAAT 385175 33 100.0 33 ................................. CGTGGTGTGGTTGATGGCATCTTGCAGCAGATC 385241 33 100.0 34 ................................. CCACCAAGGATGAACCGACCAACGTGTCCGGCGT 385308 33 100.0 36 ................................. AAATTCACAAGATCAAGAGTGGGTCTGCCATTAAAC 385377 33 100.0 35 ................................. ACGTTGATGTATTGTATCCGCAAGATATCGACTCT 385445 33 100.0 34 ................................. GTAAACTAAATATCTAAAGAAGACGCAGATATTT 385512 33 100.0 37 ................................. CATTAATCCCATCCACCTTATGAGCGAAGAGTATCAG 385582 33 100.0 35 ................................. CTTCCGGAAGTTATTATAACGACCGCCAGAGCTAA 385650 33 100.0 36 ................................. CAGTACCCGGCAAACTCGGACCATGGAATGTCTGGC 385719 33 100.0 35 ................................. CTGTACAACCACATGCGGAGTTGTCGTAGGTAGTT 385787 33 100.0 33 ................................. TAATCATATCGTAGAGGCTATTGGAGTACTCAC 385853 33 100.0 37 ................................. GGATACAACAAGCTCCGGGGCGTTGAGTCGGAATCGT 385923 33 100.0 33 ................................. ATAATCTCATGATCAGCGCAGGAGGACGGCCGC 385989 33 100.0 33 ................................. ATTGGCACCCAGAAAGGCACCGGGCAGGAAGAA 386055 33 100.0 35 ................................. TACGCCGAGAACATGGCCTATTTCACATCGACCGC 386123 33 100.0 35 ................................. CATTAATATCTCTCCTATTAATAAGAATGAAATCC 386191 33 100.0 35 ................................. TGATAATTGACGTTGTATGTCTGTGATCCAGGCGT 386259 33 100.0 35 ................................. GCACTATGGCTAAAAGTCAAAGTAACCATTGTACA 386327 33 100.0 36 ................................. GAAGCCTACGCTGCTTATCGTCGTGGTGAAGATGCA 386396 33 100.0 36 ................................. GCGCTTTTGAGTAAAGTTTTCTGGATTGTACCGATT 386465 33 100.0 33 ................................. TGCAAAGTGAGGTTGTGCCCGATGTGCAGCTGG 386531 33 100.0 36 ................................. ATTGACTTGCTTGGAACGGTATAACTCAAAGTATTA 386600 33 100.0 34 ................................. AATGCCCGAATAGTCCGTCATTATCGGTGCTGGC 386667 33 100.0 33 ................................. AATCTCTTCGAGTGGATACTGCGCCAGCTGATG 386733 33 100.0 35 ................................. AAGTAGCTGAAGAATCATTTTAGCCTATGGTTACT 386801 33 100.0 35 ................................. CGGTTTCCTCTCTATCTTGCTTAGATGCCGATCCA 386869 33 97.0 34 ............G.................... CTTAACGCTGTAGCTACGAACATTGAAGCAAGAA 386936 33 97.0 35 ............G.................... ATACACGGCATACACGTCTCAACAAAAATGGTTTT 387004 33 93.9 35 T...........G.................... CGCAGAGTCACAGTGATGTCATCAATTCCCGGGAC 387072 33 97.0 34 ............................A.... TTTTTTGGGTTTGGGTTTTCGGTTTGGGTTTTCG 387139 33 93.9 38 ...........CG.................... TTCACGTTGCAGGAGGCGCAGGCCGGGACTTTGTTGTC 387210 33 97.0 34 ............G.................... TTCTATGAGGTCCCCATAATAAGTGGGCTTAGTG 387277 33 97.0 34 ................................A CCTCAGCATAGGGAGGTTCGGCGTGGCGGATGAA 387344 33 90.9 0 ..........A..C..........A........ | ========== ====== ====== ====== ================================= ====================================== ================== 45 33 99.2 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GGAAGTAGGTGGTCTAAGTTGCTTGTACTGATTACTTATGATGTAAGTACCAAGAGTAAAGAAGGAAGAAGACGTCTATCCCAAGTCTCGAAGAAGTGCTTGGACTACGGCCAGCGGGTGCAGAATTCTGTATTTGAATGTATCGTTGATGCTACAGAGTTCCGTAAGTTAAAGTTTGAACTGGAAAATTTAATAGATGAAGAAACAGATAGCCTGCGGTTTTATAATTTGGGTGAGAAGCATAAGACCAAGGTAGAACATATCGGAGCGAAGGCTTCCTATGATATGGAGGGGCCGTTGATCTTGTGAGTAGTCTCAGGTGCGAATGCCAAGCTCCCATGAATTCCCCGGGAGATTCGCACCTCGAAATTCGTCGATGGTTGTCGAAAATCTATGACCACAAAAAATGTCAAGATGGAAACGATGTAATTAATAGAATGATGAAAGCGGAATACAGCCCGTTCTATAGCAATGAGAGAATAGTTGGGTGGATTTTCGCA # Right flank : TCTGGTCATGGCTGATGCGAAGCAGGCGGTTTATCGCGATTTCTCCTGCTCCTTCCCCGGAGGAGAATCCAGCAGGGAAGCGCAGAGCAGAAGCGCCAAGGTCATTGAAGCGCTGCTGGAGGAACATCCCGGCGGAGCAATCGTGATCGGAACGCATGGTGACGTGATGACCCTGATGCTGAATTATTATGATCCGCAGTATGAATTCCGGTTCTGGGAGTCTACCTCCATGCCGGATATTTACAAGGCGGAGTTTACCGGACGGAAGTTGATCCGGGTAACCAGAGAATGGGGCAAAGGCGATTAGGATAGCAGGATGGCACAAATAAGAGCTTACGCATGATCCTCACGGGGACCCATCGGTCTCCGCCTTCTTCCGCGCCCGGAACCGCCTGACCTTCATCAGGTTCCCGCACAGCTTGTCGTCGCAATACCGCTTGGAGCGGTTGCGGGTGTCGTCATAGTAGACCCATAGGCAATCGGGGTTCCCGCAGATGCGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //