Array 1 212263-212880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000002.1 Nostoc sp. PCC 7120 = FACHB-418 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 212263 37 100.0 34 ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 212334 37 100.0 34 ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 212405 37 100.0 44 ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 212486 37 100.0 36 ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 212559 37 100.0 36 ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 212632 37 100.0 33 ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 212702 37 100.0 35 ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 212774 37 100.0 33 ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 212844 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 100.0 36 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Left flank : GTGCTATTGTCACACTTGCTAGTAATTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTAAACCAGTTGGTACAACTACAGTTATTAAAGTGTGACCAAGCCCAAGGATATTTGTTCTCCAAGCCCTTAAGTAGTGACAAAGTTAGCTTGTTATTGGCTGCAAAGATAGAATTTTAGAACACAAAATCTTGGCTTGTCCGCCATATTCAGTTTGGAATCAGAAAATTCTACGGAAACAACGAGCTAGCGTCAACCTATAGGTGTTTTCCCGTTAACCTCAATTTTTATGGCTGAATGCCTTATCCTCTATACATTTGAATGTAGTTGACACCTTCCAAGGGTTGACGCAAATTCTGAAAACCTTGCTATGACTAATTTCCAGAATTTATTCCCATTGTTCCTCTTGACAACCCAAGGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCTGTAACTAGCC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTCTGCGTGATAGAAATCATCCCGCATTGATGCAACGCGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTGCATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATAACATACTGATGTGGTGCAAAACCTGTTGATTGCTTAAATTGGCGCGAAAAGTAATACATACTCATTCCTACTGCTGTGGAAATATCGACCAAAGTCAAATCTTGGTCAAGGTTTTCATGAATGTAGGAAATTGCTTGCCTGAGTTTCCAGTGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATTGTTCCACCTGTTACGCAATAGTGTTTGAGTAGGTGAATACACAGCGTGGTTGTTAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 61766-63032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000010.1 Nostoc sp. PCC 7120 = FACHB-418 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 61766 37 100.0 34 ..................................... GCTCTTACTGATGCCACATCAATCGCTGTAGATG 61837 37 100.0 34 ..................................... TGATGTCTAACCCCAGCAATCTAATCGCTGGCGG 61908 37 100.0 36 ..................................... GAATCTTCACCCACCCCCCCCCATCCCGCAAAAAAC 61981 37 100.0 40 ..................................... TGTTTACTTAGCAAAGAATAGCTTAAATACTTTTGCTATG 62058 37 100.0 34 ..................................... AAGAGAAGAGGCAAAGTGAGCCACCCCCCTAGCA 62129 37 100.0 36 ..................................... ACCCTCAGCCTCTCTATCACGCAATCCAAAGCTAAA 62202 37 100.0 34 ..................................... TGACTGTATTAGACGATTTGCTGATAATGTGTGT 62273 37 100.0 33 ..................................... CAGACTCATTGATTACAGGTGATCGCTTCTTGT 62343 37 62.2 105 ................CG..G.G.GCAACT..CTCC. AGACCTAACCCCCAACCCCTTCCCTACAAGGGAAGGGGAGTAATAATTAAAGCCTCTCTCCTTGCAGGGGAGAGGTTTGGAGAGGGGTTTTAAGAATAAGTCGCA 62485 37 81.1 44 CA.CGCGT............................. TCGCTTATACAACAAAGGGATCTTCTTCAATGTGTGGAACGAAG 62566 37 100.0 34 ..................................... TCGCTTATACTGCGTGGGGAAAAACAAGAAAAGG 62637 37 100.0 36 ..................................... AGGAAACAGCATCAAAAATAAATAATCTAGCCTCAA 62710 37 97.3 31 ..........................T.......... TGAGCTTTTTTATCAAGCTATCTTCACTCAT 62778 37 100.0 34 ..................................... TCGCAGGGCAACCCTCAACAACGGAACCATATCG 62849 37 100.0 36 ..................................... AAGTACAGATTCAAGTTGCATCAGCAGTAGCTGCAA 62922 37 100.0 37 ..................................... GCTAAAATGCTAAAAAAACAGCAATAACGATTGATAG 62996 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 17 37 96.2 40 GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TTGAAAGCACTACAGGATTTACCTTGCAATTTGCCACCGATTTTAGTTATTGACCAACAACTAAGTCGCTCTCAAGTTACTTCTCGCAGTAAACTGACTCATGCCAAAAAGCAGGAATCTGAATCTATCGCGGGTGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACTTATTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATTAGCGTCAATCTATAGGTGTTTTTTTCACAGTACCAAATTTTACGGCTAAAATGCTTATACTGTCATGGCTTGAGTCAGTTTAGCTTCAGTATGAGGTTGACGCGATCGCCTGAACCTTTGCTAGAGTATCTTTTTCGGTATTTTTTAAGATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACCTTAGTTTCAGATTGACGCAACCGCACCTTGAAAACTAAATACAGTAAGCCTTCTAGACTCAGGCA # Right flank : AAACTCTTAAAACAACCTGCACCTAAAGCCGCTTTACGTAGGGTTTCAAAAAACAAACCCTGGCTAATTATCTATTTAAAAATAGACGGTAGAATGCTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATATAACTGTAATGACAGCAGTGACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCAACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATAAGTAATATTGTCAACCAAGATATACAAAACCCGTTGATACGCCAAATTAATGGGTTATGAGCTATTTTGCTTAACCGGGGACGGGCGATTTTCTCTACAACCTTGGTGACACGCCGCAGATTTTGGAGGAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAAGCATCTGTACCGATAATATCAGACAGGCAGC # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 65233-63015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000022.1 Nostoc sp. PCC 7120 = FACHB-418 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 65232 37 100.0 34 ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 65161 37 100.0 42 ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 65082 37 100.0 48 ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 64997 37 100.0 47 ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 64913 37 100.0 43 ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 64833 37 100.0 44 ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 64752 37 100.0 41 ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 64674 37 100.0 46 ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 64591 37 100.0 39 ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 64515 37 100.0 36 ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 64442 37 100.0 44 ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 64361 37 100.0 45 ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 64279 37 100.0 44 ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 64198 37 100.0 37 ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 64124 37 100.0 45 ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 64042 37 100.0 42 ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 63963 37 100.0 47 ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 63879 37 100.0 41 ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 63801 37 100.0 35 ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 63729 37 100.0 35 ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 63657 37 100.0 40 ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 63580 37 100.0 33 ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 63510 37 100.0 37 ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 63436 37 100.0 42 ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 63357 37 100.0 39 ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 63281 37 100.0 39 ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 63205 37 100.0 43 ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 63125 37 100.0 37 ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 63051 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 29 37 99.7 41 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TAGAGGAGTCTGTTTTGAATTATCAGTTAGAGAAGCGTTGGCTACCCATACTGAAATTAAGTGAGGACAGTCTCAGGGTTTATCCTCTTGATGCTACAGCCAAGCAGCAAACAAGGGTCTATGGTGGTGAGCCTCCTTATGAACCACCAGATTATTTAATTTTGTAACGTCTATACTCTGGTGAAAATGATGTTTTTAAAGGCTGAAACGCAAATTTTTACTAGGGCTTGGCAGTTTGTAACGGATTGTAAATGTCACTGCTAATTCGTCGCAGGGAGATATGACAAGCTAGGAAGAATAAATATGTGTAAATAAAAGTAAAGTTAGTAATTTAACCTTGACTACTGGAGTTTATTCGGTTAAATTGTCTATAAAGCTGAATTTTGGTAAAAAAGCTTTTGATTTATCACTACTGAGTGTATAAACTACAATAGCTTTTGCGTACCTCGGCGCAACTGAACCTTGAAATCTAAATATAGTAATAGTTTCCAAAGGGTAGG # Right flank : GACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAGCTTACTTACCCACAAGGGGGCGGAAATTAAAAGATATAGCTGTTACCAGTAGTGTTAGAACATCAATAGATGATACAACCTAGACACAACAAGACTTTTCACCCAGTACCCAGTCCCCAATCCCCAATCCCCAGCTATATGATTGAGCGATCGCCAGAATTTGGATAAAATAATTGACGGGACTATAATTTTGGGCGTTGCATAAATGCGGGATGAATTGAGACTTTTTTGTAAAGCAGAATATTGATTCTACCCTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTTTGCAGACATACTTTAAGGAAATCTCCCCGCTAAATTCCACTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTACCGCAAGCGGAACGCCTGGCGGCGAATGCGTGAGACAAAAATCATCCCACTAATCAGCAACGCCTAATTTTGAATTACCCAAAGAGTGGGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 628-1538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000036.1 Nostoc sp. PCC 7120 = FACHB-418 contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 628 37 100.0 37 ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 702 37 100.0 35 ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 774 37 100.0 33 ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 844 37 100.0 35 ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 916 37 100.0 35 ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 988 37 100.0 35 ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 1060 37 100.0 41 ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 1138 37 100.0 34 ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 1209 37 100.0 39 ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 1285 37 100.0 33 ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 1355 37 100.0 37 ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 1429 37 100.0 36 ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 1502 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 37 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAAGTTCTCAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGTCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATTGGCGGCGAAATGCCAATAGACACCACCGTATTTTTTGCTTAACTTGTGCGTCAACCTATAGGTGTTGGGCAAACACACTGAAATTTATCGTCCCAAACCCTTCCCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCCTCACCATAAATACTTTTGCACCAATTTTCTCCAATTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTCCACACCTGGGCG # Right flank : CATCAGATGCGGTAAACTTAATTGTCAGATTTTCAGCTTTATACCTTGCTCTCTTCGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTGTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACATCTCGCTGAATAATCTCTTCTACTTGATTGGCAAAGTTACTAAATGCTTTATCGTGGGTTTCATAATTCACATAAGGCCCAGTTAATTGAAAGAATTGCCAACCTTGTGTTTTCAAAGATTCGGCCGTGCGGCGATAGTGTCGCCAGCGTTCTCCATAGTGGAAAAATTCTTCAACAGCTGCGCTAATTGCTACAACTTGGCTAAGGGAAAAAGTAGCCCAAACAAAAATTTCCCGCACCTGAGAACTGTTAATATTGAGACTTACCAAAGCGGGTAGAGCTACACCACCAATAATTGTGACCAATCGTAATCTGTAATATCTATTCCGTGATTTACCTGCTTGTCTTTCCATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 297264-297518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000003.1 Nostoc sp. PCC 7120 = FACHB-418 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 297264 35 97.1 37 ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 297336 35 100.0 38 ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 297409 35 100.0 40 ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 297484 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 99.3 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GATTATTTAAATTGGTCGCAATTTGAAAATGTTCGGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATAGTATAGTGCTGCTAGATTATTTAAAGATTGGGCAACATCAGGATGCTCTGAACCTAAGAGATTTTTTCTAATAGTTAAGGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATGCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATACTCTGTTAGCTGCTGGCTTTTCCCTAAGTTGACAGCTTGTTGGGCAATAATTATCGCTTGCTTTAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAGTTAAGTTGATTTAATTGTTTTAAGAGTTTTTTCATCTGCTAGTTCCAGATGTTTGTATATTTTTTAGGTTTGATTTTTCAATCAGTTATTTATTTTATCTAAAATCGTTCATCATCA # Right flank : CCCTACCCTTGTAGAAGCATTACTACGAGAGGGTTTGAAGGGGTCATTTTAGCGGGGGGTACATTTTACCTGTCAACAAGCACAAATTATTGACAATTGATGACTCATGCACCCTATTGAAACCCTTGTACAGTAAGCGATTAGCGGGGGTCAACGAAAGAATCAGTGTTTTGGCGATCGCTCTACCCCCGCTAAAAACTTACGTATGGAAAGTAAAACTAAGCACTTTTGCGTTTATTTTGAAACCTGATATTAAGTTTTCAAGGTTCTGTTGCTATTGAGCAGTAGTATAACAAACTACTTGAAGTTTTGAACCCTTAAACTATTAACTTTTCTATCATGCAGTAATCATGTAATCTGTGTACCAAATTTGATATTCTCCGCCTCCAGTCACATATTCTAGTAACGCCACCAGATGACTTGCTTCTAATTCCAAAGGGTCATTATCTCCTGGCGGTAGCCAGTCTAATTCAGGTACTTCGTTGGTAAAAACTGCGATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 302769-301716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000003.1 Nostoc sp. PCC 7120 = FACHB-418 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 302768 35 97.1 36 .............................C..... AAAAAAAAGCCGCATTTAATTTGGCAAATTCCAATG 302697 35 97.1 39 .............................C..... CGGGCTTGTTACCTTAGAGATACATTAAAATTAAATCCA 302623 35 97.1 36 .............................C..... TTTTGGTTTACGTTCCTATTGATAACCAGTTTGAAG 302552 35 97.1 35 .............................C..... CTGAAGAGATTGAAAGACTCAAACGCCAGGCCGAA 302482 35 97.1 39 .............................C..... CGTTTTGTTGCTCGCATTATCGTTTCTTGCATTTTATTG 302408 35 97.1 40 .............................C..... TTACAAACTTTTTCTATCCACCAGTTCCGTTTTTTATTAG 302333 35 100.0 39 ................................... CTAGTTGGTCCGCTTTCAAGCCCAACAAATTATGATAGT 302259 35 100.0 38 ................................... ATAATAATTTTCTTTATATATTTCCTTGTCTTTTATTT 302186 35 100.0 35 ................................... AGAAATTTCTATCGGAGGTGTAGGCGCACAATAAA 302116 35 100.0 34 ................................... TGGTGGAACAAGTTTTGTCGGAATCGGTGAAAAC 302047 35 100.0 39 ................................... ACTCTCCGCTTTGCTTGTTGTTGCCATTAAGGCACAAGA 301973 35 100.0 39 ................................... TATATCTAGAATTCCAGGAATAAATTTTCTAGGAAGCGT 301899 35 100.0 40 ................................... ACATATAATCGATGCAGAAATTCAAGCTTTTCTTAGCAGT 301824 35 100.0 39 ................................... CTTTTTAATAAGTTAGACCCAAACACACAATTTCTGATA 301750 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 98.8 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : AATCTGTAATTTTATTTTCTACTTCTCGGTTAATTAATTGACTGGCTAATTTTTTCGCATCATCTAAATTTTTACCTATAGCAAAGGCTAAAAACCCACCCAAAAATGCAAATACTACTAAGGTAAATTGCATTGCAGCAACAAATCTGTTAAAGCTTTCACCTAGTTGACCATTGGTAGCCTTGAGAAATTCTAACTGGCTTTTGAGTAGTTCAATATCATTGATATTTTTTGCCGGATTTACCACTGGTGAAGGTGTGGTTGTAGGTGTTGGAGTTTGGGCAATAACTAAATCCCAAAGGTGGGATAAATCAATTGTAGGTAGCCAATCCATAGGTATTTTGTTGATGGCGATTACTTCTCTATTTAATCATGTGCGATCGCCTGCATTATTTTATTCCAACTTTAACTTAAGCGATCGCAACTTCCCTTAAGTTTCAATAGTGGTTTTACTGTGCGATCGCATTACATCACCGCTACTAAATCCCGCTATTGATTAT # Right flank : CCTACCTGTTCAGAAGCCTTGCCACGATTGAGTTTGAGATAGGTCAATCTGAGGGGGTCATTTTTTCAGCCCAATAATTGATAAACTCTGTCAATAAACCACTTTCTAATGAGCCTCAAACGCTTACTCAGCAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCGTTGCCTGACCCCCTCAGATGCTTATCATTCAACAAAAAACTATAAGTTTGCCAAATGAATCAGAGTAAATGGAAATACTTAATCTAAGTATTATTAACTTTTCATGGTTCAAAAACTCTGATGATCAGTGTATAGAAACCTACTAAAAAAGTCAAGGTGAAGCATAAAGTATAAAATTACGCTCCCTTCCTTCCCCTTTTAAGCCTACTGTGTACACACAAGCCCACGAGATGTTCCCTACGGTTAGGCTTATACCATTTCACTAAAATTCTGATACAGATCCAAATCCAGAAACCTTTGCAAAATATAGGTTTCTTAATTTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 102329-101420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000016.1 Nostoc sp. PCC 7120 = FACHB-418 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 102328 35 100.0 41 ................................... TATATATCATACCAGCCCAACCAGTTGGAATTGCTCCAGCA 102252 35 100.0 39 ................................... TTGAAGCAGTTGCAGCCTTTTTGCGAGCTTCTTCTACTT 102178 35 100.0 41 ................................... AGTATGCTGACCAGCGCTCCACGCTTGGTCGATTTCATCTT 102102 35 100.0 40 ................................... GATCGAGTCAGATCTACCCAGCGGGCGCTGAGCGCTTTCA 102027 35 100.0 39 ................................... CCTAACTGTTCGGTTGCTTTTGTGGCAACCTAAAAAATT 101953 35 100.0 40 ................................... ATAAAAGACATATTATGCCTTGTTTGCCCTATCATAGACA 101878 35 100.0 42 ................................... AAATATATTGAGCAACCTACGTTGCATACAATATAATCCAGA 101801 35 100.0 168 ................................... TTTATAAAACCGCCTCTACCTTGAGCAACATCTTGTTGGCGTTGTATAAATGCGGGATGAATTGAGACTTTTATACAAAGCAGAATATTGATTCTTTGCGCCTACTCTTCGAGTTCCGCTTGCAGTATGCGTGATACAAAAATCATCCCACTAATCAGCAACGCCCTT 101598 35 91.4 38 ........A...........TG............. TTCCATTCCAAACCTTCTGTGCCACACATAGAAAAAAT 101525 35 85.7 38 .......G...........CTG........A.... ACTAAAGGATGCTCAACCACCAAGCCTTGAAAATTAAG 101452 33 91.4 0 ..........A...-...............-.... | ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 11 35 97.1 53 GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Left flank : AACTACGAAATTTTCTAGAGGTTTTGACCCGGTAAGTAGAAATATGCGGCAGTTTTAACAAAAGCTTTGCCTTTTGGAGTTTGCTATGGTACTGTTTTTACAAACATCTGCACCTTGAAAATTAAATAAGTACATATAGCGTTTCTCGTTTGTCTGCAATACGTTTTGACTTCTATCCTACAAGGAGACAGGCTTTAAGGCTTACTCTGGAGGTTAAGTCTGTATTAGACTCAACTGCAAACCGCTATATTCTTAACTTGTAATCGAATGGTTAGTTTCGTCAAGTTATTTTATTAAGAAATGTAACCTGAGGGGGTCGCCTAAAGCCTGAAAAGCTTATTATCTCGTTGACCCCCTCAGATAGCTTACCCTATAAGGGTTTGAGTCACCTTGATGATGTAGTTATTGTCAATAAGCGATCTCTATTGACAGGTAAAATATACCCCCCTCAGTTTTACAGTTCTGTAAGTCTTATTTGGTAAGCTTTCTGTAAGTGTAGG # Right flank : AGAAAGACGATCGCCTAAACTATCCAAATATGTAGAGAGACACAAATATTTGTAGGATAGGTAGAGCGATCGCCTTTTAACTAAAGCCTATGCAGATATCATCTTCCGGCTATATCCTAGCGTTGGACTTGGGAACAACTGGAAACCGGGCATTTATCTTTAACAATGCAGGTAAAATAGTTGCTCAAGCATATAAGGAACTAACACAACATTACCCCCAACCAGGATGGTTAGAGCATGACGCGGAAGAAATCTGGCAAGATACCTGCTGGGTGATGAAGACAGCCATCGTCAATGCACAAATATCTCCTAGTGAAATTGCGGCTATAGGTTTGACTGTACAACGGGAAACTTGCCTACTCTGGGACAAAACCACGGGGAGACCATTACATAAAGCCATTGTTTGGCAAGACCGCCGCACGGCTCCCCTGTGTCATCAGTTACAGGAAAAAGGCTATGCTCAGGAAATTTACAGTCGTACTGGTTTAGTAGTTGACGCT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 739-417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000075.1 Nostoc sp. PCC 7120 = FACHB-418 contig75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 738 38 97.4 34 A..................................... CTGATGAAGAAAAAGTTAGTATCTTTATCCATCG 666 38 100.0 32 ...................................... GAAGCGGTGGGGCGATCGCATCCAAAATTTAA 596 38 100.0 33 ...................................... TTTGAATATTCAGAACTTTATATTGTGCGCGAT 525 38 100.0 35 ...................................... ATTAACAGCTTCTACCAAATCAGCTTGCTCCGTCA 452 36 78.9 0 G.................G.....AC-.T...-....A | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 95.3 34 CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Left flank : GCAAAAGAATTAGCCCTCTATGCTTATAGTCTCCGCCTAGCTAGGCGAAGTTGACAAACATCTGAACCTTGAAAATATAATATGTAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAATTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGCCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTGATTTGACGCACCAAAGAGAGGTCAAAATTCCGATCTAGGTTCGCGCACATCCTGAAAACCTTATCCTACAAGGAATTTATGAGTAAATTTCTTTTGTAGACAATTCAAAAATTACATCCTGGGAGGCTATTTGATGAGGTTCGCGCAAATCTGCTTCAAAAACCTTGCTAGACAAGCGTTTCATAGAGTGGC # Right flank : ACAAATTGGATATGAAACTGCCTTACGTTGTCTGATGGTGTAATTAATTTCCAAGAAGTAGAGGGTTGAAAGCAAATCCCGTCATCGGCTTGTAACTAAAGTTATTCAGGATAAGCTACTCATAGAAGTGATTAAAAGAGCTTTTTGAATGCAAACGCTTATAATAGGGGCTAAATATATAGAGAAACTCCATATATAAATTGTTGCTTTTCCGAAAAATGACAATAATTTGTCACAAATATATATGGAAGCGAGTTACTAAGTTGGATGACAATAATTTGTCACAACGACATCAATTTGTCACCGACGACAAATAAGAGACCATTTATAAAGTAAATCTTTAGACGACTAGACGACGTAGCATAATACGAGTCATAACGGCATATATGGCAGCCTCACTCATTTCTGGGAGACGCT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 114327-113560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000017.1 Nostoc sp. PCC 7120 = FACHB-418 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 114326 36 100.0 33 .................................... TTGTCATCTAGAAATGCAGCTTTGTATGCAAGA 114257 36 100.0 45 .................................... TTATATTGGTAGAGGCTTTTTTAGCTTCGTTTATATCAATGTGCA 114176 36 100.0 37 .................................... GCAGGTATTGCTGCTTGCACAACGCTTGCAGTAGTTA 114103 36 100.0 37 .................................... GTTTTTAATCTCCGAAGGACTAATGCTTGGAGCAGGA 114030 36 100.0 39 .................................... CGTTCCATCTGCTGTTCGTGCAAAAAGCGATGGTCGCTT 113955 36 100.0 35 .................................... TCGACGTCCTATTTTCGAGATTCCTCGATAATCAT 113884 36 100.0 32 .................................... AACAGTCACAAATCCTAGAGTGGCTAAGGGAG 113816 36 100.0 37 .................................... ATCTTGTAATTTCAGGATATAATGCAAAGATGATTGA 113743 36 100.0 36 .................................... ATCCGACATCGCTATAGAAATTGTTTCCAGTCTCTC 113671 36 100.0 40 .................................... CCGATAGCGAATGCCGTTTATCTCCAGGCAAAAGATAAAG 113595 36 86.1 0 ....T.....G.C.................AT.... | ========== ====== ====== ====== ==================================== ============================================= ================== 11 36 98.7 37 CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Left flank : AAGACAGGCTTTAGTTGATTGGGCGCAGAAAAAAGGAGTGCAAGGAGTTAATGACTATCGAAAGCAAAAAAATGTTGTGAGTATTGATGGTTTACCGACTCCACTCAGCAAATTATTTTAAATGGGTTTTAGTGGGGGATTGGTAATTGGTAATCGTAAAAAGCAGTTACCTTTTACCAACCATCTTGTAGCCAGACTTGATATTCATTGAAATGGGCGTGCAATTGCTCAAAATCCACTGTTTTTGTAACGATTATGTAACAAATTTGACAAAAATGACTAATAAATTTTATTTTAAACACTAGCGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTAAGGATTTCCGGCTGCAAAATTCCCCACTTCTGAAATTTATTTGATTAAATAAAAAAGTGGTGTCGAATTTGGGGTCTGAAACCCTCTCTATACAAGCGTTGTAGAAGTGAACT # Right flank : TAGCGATCGCACTTTGCGATCGCATTGTTAAATACGGCGGAAATATTATTTACCTATCAATTAGCCTGAGAAAATATCAGCAAAGATGTAATTGCTTTTGCTACAAAGATGATATTTGTCATAAATAAGTAATTGCCGAAAACAGAAAGCATTTACAACAAATGAGAAAGCAATATCTCTAATTGCTTGCGGAAAACACTGAAATGAATACGCGATCTACTGAAATGAGAAAGCATTTACAGCAAATGAATAAGCAATATGTCTAATTGCTTGCGGAAAACACTGAAATGAGAAAGCATTTAAGGCAAATGAGTAAGCATTTAAGCATTTTGCTTTCTCAAACAGGCAAATTATATAGCTGTTGACGGTTGACAGTTGACAGTTGACGGTGAGGCAGTCGCAGTTAGTTAGTAGGTTGGGTGGAACGAAGTGTAACCCAACAAATAATATTGATAAATTAGCAGATTAAACTACAAAAATACCTCAATTTAATAAATCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 121562-121315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQQ010000017.1 Nostoc sp. PCC 7120 = FACHB-418 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 121561 32 100.0 41 ................................ TTTAAGTGGTGGCAGCGCTGCTAGGATTCCTAATAGGTTTC 121488 32 100.0 39 ................................ AATAACTGGATAGCACTAGCAGAAGGGCTAGAAGGTTTC 121417 32 100.0 39 ................................ GTATATCAAGCGGGTACAGGTAACTCAGGAAAAAGTTTC 121346 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 4 32 100.0 40 AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Left flank : TGTTCAGGGTGAAATATCAACAGAATCCCAATCCAGGTAGAACTCAGCACTAAACCAGCACTAATGAGTAAAATTGCGATCGCAATTATTGAGGATGGTTTATAGGATTTTGATGGAGAAATCGCTTTCTGTATCTGGGTTTGATTAATTTTTCCCTCACCTTCTTTTGGCAAATCGGTATTACCTACCTGTTGTTGCTGGATTTGAGGTTTCTTCCCTTCCAAATCAGAGCCGTTTTGCTTAGAAGATTTTGGCGTTAGCTTGCGCGAGCGATTTGCCATGTTATTTCTCTGTTAATTTAAGGTATTAATTTGTGTTTGTTTTTTCTTTTATACTCGCGCTTTGATTAGTTGCCTAGAAGTAGGTGGTTTAATTTTCTACACAAAAAGGATGAGTAGATATTTTGGGCGATCGCCTTTAGGTATTGCTTTGCCTAGCACGTTGGGTTTTCCGCAAAATTAGGGTTGTAGTTTAGAGTACTTACGCACCAGAGTCGTTTT # Right flank : CGCTCGGCTCTCAAAGCCTTGCTGTATTTGGTTTTCAAGGTTCAGTTGCGTGAATTATGGAGCAAAGATAACTTTTCAGACATGGGATTGTCAAGAGGCGCATGGCAAAAATTAACTCAAAAGCTGTTACAGCAAAGGTTAGAGGTAATTGCGTCAACCACAGTTTTAATGTTATGGGCTGTAACCTAATCAGGGTAAGGCATAGAGGCAAGAAACTGAATCTGTGCCGAAAAACATCTATGGGTTGACCGGAAGAGGCAGGGCGAGGCTTGTACAAGCTTCCGTCACGGATTTCCCCCTTGCTCCCTGCCCCCTGCCCCTTTTCCTCTTGCTGACGCAATATTTTAAAAACTAAAGGTGGTACGGATAGCACCGATGAAAATATCATTGTTGCTGGAAATATGACCAGGGTCAGTGACGAGAAAAAAGCCAGGAGTGATGGCGATATTATCATTGACTAAATAGCGGTAAAAAACTTCGTAGTGAGTGGAATTGCCAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //